View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9904_high_18 (Length: 227)
Name: NF9904_high_18
Description: NF9904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9904_high_18 |
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| [»] scaffold0069 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 20 - 214
Target Start/End: Complemental strand, 10074242 - 10074048
Alignment:
| Q |
20 |
caccaatccccaacaagataaaaaacttcatgtggcgcttggcaaagaacattctcccaactagacataacctacagaggaaaggtattgttctagacac |
119 |
Q |
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| T |
10074242 |
caccaatccccaacaagatcaaaaacttcatgtggcgcttggcaaagaacattctcccaaatagacacaaccaacagaggaaaggtattgttctagacac |
10074143 |
T |
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| Q |
120 |
ctcctgccctttatgtcattctgaagctgagactgtggaacatttattcatgaactgtaatttgtccaaactagcactgtttgcatcgcctttgc |
214 |
Q |
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| T |
10074142 |
ctcctgccctttatgtcattctgaagcagagactgtggaacatttattcatgaactgtaatttgtccaaactagcactgtttgcatcgcctttgc |
10074048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 115 - 213
Target Start/End: Complemental strand, 10136199 - 10136100
Alignment:
| Q |
115 |
gacacctcctgccctttatgtcattctgaagctgagactgtggaacattta-ttcatgaactgtaatttgtccaaactagcactgtttgcatcgcctttg |
213 |
Q |
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| T |
10136199 |
gacacctccggccctttatgtcattctgaagctgagactgtggcacatttatttgatgaactgtaatttgtccaaactagctatgtttgcatcgcctttg |
10136100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 131 - 213
Target Start/End: Original strand, 10356479 - 10356562
Alignment:
| Q |
131 |
tatgtcattctgaagctgagactgtggaacattta-ttcatgaactgtaatttgtccaaactagcactgtttgcatcgcctttg |
213 |
Q |
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| T |
10356479 |
tatgtcattctgaagctgagactgtggaacatttatttgatgaactgtaatttgtccaaactagctatgtttgcatcgcctttg |
10356562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 177
Target Start/End: Original strand, 36091927 - 36092081
Alignment:
| Q |
23 |
caatccccaacaagataaaaaacttcatgtggcgcttggcaaagaacattctcccaactagacataacctacagaggaaaggtattgttctagacacctc |
122 |
Q |
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| T |
36091927 |
caattcccaacaaggtgaagaacttcatgtggcgcttggcaaagaacatcctcccaactaggcaaaatctgcagaggaaaggtatttccctcgacacttt |
36092026 |
T |
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| Q |
123 |
ctgccctttatgtcattctgaagctgagactgtggaacatttattcatgaactgt |
177 |
Q |
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| T |
36092027 |
atgccctatatgtcatgctgatgtggaaactgtggaacatctattcatgaactgt |
36092081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 34 - 213
Target Start/End: Original strand, 31699572 - 31699751
Alignment:
| Q |
34 |
aagataaaaaacttcatgtggcgcttggcaaagaacattctcccaactagacataacctacagaggaaaggtattgttctagacacctcctgccctttat |
133 |
Q |
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| T |
31699572 |
aagattaaaaatttcatgtggcggctggctaagaatatcctcccaacaagatccaatctgcaaagaaaaggtattgctcttgacacctcttgcccctctt |
31699671 |
T |
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| Q |
134 |
gtcattctgaagctgagactgtggaacatttattcatgaactgtaatttgtccaaactagcactgtttgcatcgcctttg |
213 |
Q |
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| T |
31699672 |
gtcactctgaaaccgaaactgcggaacatttgttcatgaattgcaatatatccaaactggcattgtttgcttcgcctttg |
31699751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 213
Target Start/End: Complemental strand, 29783159 - 29782986
Alignment:
| Q |
40 |
aaaaacttcatgtggcgcttggcaaagaacattctcccaactagacataacctacagaggaaaggtattgttctagacacctcctgccctttatgtcatt |
139 |
Q |
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| T |
29783159 |
aaaaacttcatgtggcgtttggcaaagaacatcctcccaaccaggcacgatctacaaaagaaaggtatatccttggatcctttatgcccgttatgtcatt |
29783060 |
T |
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| Q |
140 |
ctgaagctgagactgtggaacatttattcatgaactgtaatttgtccaaactagcactgtttgcatcgcctttg |
213 |
Q |
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| T |
29783059 |
ctgatgtggaaactgtggaacacttatttatgaactgtaacttgtcaaaatgagccctgtttgcctcacctttg |
29782986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 23 - 177
Target Start/End: Complemental strand, 65466 - 65312
Alignment:
| Q |
23 |
caatccccaacaagataaaaaacttcatgtggcgcttggcaaagaacattctcccaactagacataacctacagaggaaaggtattgttctagacacctc |
122 |
Q |
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| T |
65466 |
caattcccaacaaggtgaagaacttcatgtggtgcttggcaaagaacatcctcccaactaggcaaaatctgcagaggaaaggtatttctctcgacacttt |
65367 |
T |
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| Q |
123 |
ctgccctttatgtcattctgaagctgagactgtggaacatttattcatgaactgt |
177 |
Q |
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| T |
65366 |
atgccctatatgtcatgctgatgtggaaactgtggaacatcttttcatgaactgt |
65312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 23 - 177
Target Start/End: Complemental strand, 20386857 - 20386703
Alignment:
| Q |
23 |
caatccccaacaagataaaaaacttcatgtggcgcttggcaaagaacattctcccaactagacataacctacagaggaaaggtattgttctagacacctc |
122 |
Q |
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|||| ||||||||| | || |||||||||||| |||||||||||||||| ||||||||||| || || || ||||||||||||||| ||| ||||| | |
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| T |
20386857 |
caattcccaacaaggtgaagaacttcatgtggtgcttggcaaagaacatcctcccaactaggcaaaatctgcagaggaaaggtatttctctcgacacttt |
20386758 |
T |
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| Q |
123 |
ctgccctttatgtcattctgaagctgagactgtggaacatttattcatgaactgt |
177 |
Q |
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| T |
20386757 |
atgccctatatgtcatgctgatgtggaaactgtggaacatcttttcatgaactgt |
20386703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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