View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9904_high_5 (Length: 460)
Name: NF9904_high_5
Description: NF9904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9904_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 319
Target Start/End: Complemental strand, 41263321 - 41263020
Alignment:
| Q |
19 |
taaagtttgacaaaagatttttgagaactaaaatgctacaaaaatataaaagcagnnnnnnnntataggtaaattgcaagtaaagtaacctatttgattg |
118 |
Q |
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| T |
41263321 |
taaagtttgacaaaagatttttgagaactaaaatgctacaaaaatataaaagcagaaaaaaa-tataggtaaattgcaagtaaagtaacctatttgattg |
41263223 |
T |
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| Q |
119 |
tcctaattctccaatttgcatagttgatattcttaattcttccaagaccatgtcgttccttcacctccataagcactacaacaacattgtggtgtcgttg |
218 |
Q |
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| T |
41263222 |
tcctaattctccaatttgcatagttgatagtcttaattcttccaagaccatgtcgttccttcacctccataagcactacaacaacattgtggtgtcgttg |
41263123 |
T |
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| Q |
219 |
caaatatgatctggcaaacctgcataaaagg--ggggaaatgcaattttagaatttctcctttgtctctatcattcagcaacatgttaattgtatcccat |
316 |
Q |
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| T |
41263122 |
caaatatgatctggcaaacctgcataaaaggggggggaaatgcaattttagaatttctcctttgtctctatcattcagcaacatgttaattgtatcccat |
41263023 |
T |
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| Q |
317 |
ttc |
319 |
Q |
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||| |
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| T |
41263022 |
ttc |
41263020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 441
Target Start/End: Complemental strand, 41263023 - 41262985
Alignment:
| Q |
403 |
tttctgttaaacccagccatagatctctccacacctaac |
441 |
Q |
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| T |
41263023 |
tttctgttaaacgcaaccatagatctctccacacctaac |
41262985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 50510054 - 50510102
Alignment:
| Q |
169 |
tgtcgttccttcacct-ccataagcactacaacaacattgtggtgtcgt |
216 |
Q |
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| T |
50510054 |
tgtcgttccttcaccttccataagcaccacaacatcattgtgatgtcgt |
50510102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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