View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9904_high_7 (Length: 375)
Name: NF9904_high_7
Description: NF9904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9904_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 14 - 360
Target Start/End: Original strand, 40651927 - 40652273
Alignment:
| Q |
14 |
agacgctacataaaacttaattaatgtattatatgtaccttaaaatatggtgagtcttggctaagatcatcagtgaggcgatactcatgcatgatccagt |
113 |
Q |
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| T |
40651927 |
agacgctacataaaacttaattaatgtattatatgtaccttaaaatatggtgagtcttggctaagatcatcggtgaggcgatactcatgcatgatccagt |
40652026 |
T |
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| Q |
114 |
tagttctatcgcctaaaggagcccttccaagatagaaaacgagtgttttgcagttgcctgtgatagtggatgaactacaccggcacacaatctttctctc |
213 |
Q |
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| T |
40652027 |
tagttctatcgcctaaaggagcccttccaagatagaaaacgagtgttttgcagttgcctgtgatagtggatgaactacaccggcacacaatctttctctc |
40652126 |
T |
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| Q |
214 |
ttttccagtggctttccagtagccagctttggtagctctatttgttcttgatccatttgggtactttagatctcgcgtacaatagaaaaaccattctaaa |
313 |
Q |
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| T |
40652127 |
ttttccagtggctttccagtagccagctttggtagctctatttgttcttgatccatttgggtactttagatctcgtgtacaataaaaaaaccattctaaa |
40652226 |
T |
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| Q |
314 |
tctcgtttcggtagaaatgatttctctgcatttcacacctcatgaat |
360 |
Q |
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| T |
40652227 |
tctcgtttcggtagaaatgatttctctgcatttcacacctcatgaat |
40652273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 212 - 343
Target Start/End: Complemental strand, 4777061 - 4776930
Alignment:
| Q |
212 |
tcttttccagtggctttccagtagccagctttggtagctctatttgttcttgatccatttgggtactttagatctcgcgtacaatagaaaaaccattcta |
311 |
Q |
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| T |
4777061 |
tcttttccagtggctttccagtagccagctttcgtggctctatttgtccttgaaccatttgggtacttgcgatcccgcggacagaagaaaaaccattcca |
4776962 |
T |
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| Q |
312 |
aatctcgtttcggtagaaatgatttctctgca |
343 |
Q |
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| T |
4776961 |
tgtctctttttggtaggaaagatttctctgca |
4776930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 142
Target Start/End: Complemental strand, 4777216 - 4777143
Alignment:
| Q |
69 |
cttggctaagatcatcagtgaggcgatactcatgcatgatccagttagttctatcgcctaaaggagcccttcca |
142 |
Q |
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| T |
4777216 |
cttggctaggatcatcgttgaggcgatattcatgcatgacccagttggttcgatcacctaaaggagctcttcca |
4777143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 280
Target Start/End: Complemental strand, 27141850 - 27141782
Alignment:
| Q |
212 |
tcttttccagtggctttccagtagccagctttggtagctctatttgttcttgatccatttgggtacttt |
280 |
Q |
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| T |
27141850 |
tcttttccagttgctttccaatatccacctcttgttgccctatttgttcttgacccatttggatacttt |
27141782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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