View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9904_low_1 (Length: 751)
Name: NF9904_low_1
Description: NF9904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9904_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 710; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 710; E-Value: 0
Query Start/End: Original strand, 13 - 734
Target Start/End: Complemental strand, 21397785 - 21397064
Alignment:
| Q |
13 |
atggacatcatggatgatgacattggtgataaattgaatagtaatgcatgctccaaaggcaatatgaacattggcaccacgaccatctatggtcttaaaa |
112 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21397785 |
atggacaccatggatgatgacattggtgataaattgaatagtaatgcatgctccaaaggcaatatgaacattggcaccacgaccatctatggtcttaaaa |
21397686 |
T |
|
| Q |
113 |
ctgttcatgatcaattcttgcttcagggtgatcaccatgtctctcttgaacacaatccacaatggcctatcttgaatgacggcgtgacggagagtgccag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21397685 |
ctgttcatgatcaattcttgcttcagggtgatcaccatgtctctcttgaacacaatccacaatggcctatcttgaatgacggcgtgacggagagtgccag |
21397586 |
T |
|
| Q |
213 |
gtcttgggttcacagggtcgtcatctcttgggttattcacaacgtagtaccttccgtcgcggccaccaatagcattgcgaccaaagccaatggcacaatc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21397585 |
gtcttgggttcacagggtcgtcatctcttgggttattcacaacgtagtaccttccgtcgcggccaccaatagcattgcgaccaaagccaatggcacaatc |
21397486 |
T |
|
| Q |
313 |
agccaaccgctttcggcggcggtaccaaagcttgtcacagcgccagcagtcatccattggatttccagtcccacatgagaaaaaactcagactccttctc |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21397485 |
agccaaccgctttcggcggcggtaccaaagcttgtcacagcgccagcagtcatccattggatttccagtcccacatgagaaaaaactcagactccttctc |
21397386 |
T |
|
| Q |
413 |
tccgtgtgattgcgtatagtcctgttaaaatttaacaagtattttctattgaattaaacattggtagaatttgatgatcataaaacactacagtacatta |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21397385 |
tccgtgtgattgcgtatagtcctgttaaaatttaacaagtattttatattgaattaaacattggtagaatttgatgatcataaaacactacagtacatta |
21397286 |
T |
|
| Q |
513 |
tttagaagtcatactgctaagggacaattttactttatttctttgacttctactgttaaattacccgtttgtcttaaaggactgaattaaaacttgaacg |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
21397285 |
tttagaagtcatactgctaagggacaattttactttatttctttgacttctactgttaaattacccgtttgttttaaaggactgaattaaaacttgaacg |
21397186 |
T |
|
| Q |
613 |
taatcaatgataaacagtttgatatgtaagacaatgtgaaattattattgatgtctgatgagggatgagactggtgggtccgtcatgtgggtcaacaatt |
712 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21397185 |
taatcaatgataaacagtttgatatgtaagacaatgtgaaattattattgatgtctgatgagggatgagactggtgggtccgtcatgtgggtcaacaatt |
21397086 |
T |
|
| Q |
713 |
aaggatacggatagaatgatac |
734 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
21397085 |
aaggatacggatagaatgatac |
21397064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 146 - 282
Target Start/End: Complemental strand, 17909812 - 17909676
Alignment:
| Q |
146 |
accatgtctctcttgaacacaatccacaatggcctatcttgaatgacggcgtgacggagagtgccaggtcttgggttcacagggtcgtcatctcttgggt |
245 |
Q |
| |
|
|||||||||||||||||||||||||| | ||| |||||||| || |||||||| || | ||| || || || ||||| |||||||| ||||||||||||| |
|
|
| T |
17909812 |
accatgtctctcttgaacacaatccaaagtggtctatcttggataacggcgtggcgcaaagttcctggcctagggttaacagggtcatcatctcttgggt |
17909713 |
T |
|
| Q |
246 |
tattcacaacgtagtaccttccgtcgcggccaccaat |
282 |
Q |
| |
|
| | ||||| |||||| |||| ||||| |||||||| |
|
|
| T |
17909712 |
cagtgacaacatagtactttccatcgcgaccaccaat |
17909676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University