View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9904_low_10 (Length: 335)
Name: NF9904_low_10
Description: NF9904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9904_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 284
Target Start/End: Complemental strand, 17107007 - 17106731
Alignment:
| Q |
17 |
acatcataaaaacgtaccaatgagtacagaaacatgcattatgagaaaggttctaaaagcaaatgaaattgaacacacatacgtacgaacacat------ |
110 |
Q |
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| T |
17107007 |
acataataaaaacgtacgaatgagtacagaaacatgcattatgagaaaggttctaaaagcaaatgaaattgaacacacatacgtaagaacacattgagat |
17106908 |
T |
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| Q |
111 |
gcatcaagccttgatgatgttataacattacaagatgacaagatcataaccagatgaaatgttaactcggcaaatgactccttcagcctgtgtaaccatc |
210 |
Q |
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| T |
17106907 |
gcatcaagccttgatgatgttataacattacaagatgacaagatcataacaagatgaaatgttaactcggc-aatgactcatgcagcctgtgtaaccatc |
17106809 |
T |
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| Q |
211 |
tctcgggcaagtta----taaatcaagaaaatagtgtctttgcgaacacattaatcactgtcaaatttaaaattctca |
284 |
Q |
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| T |
17106808 |
tctcgggcaagttaaagttaaatcaagaaaatagtgtgtttgcgaacacattaatcactgtcaaatttaaaattctca |
17106731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 17106711 - 17106675
Alignment:
| Q |
280 |
tctcaataaattcaaaacaaacaattatagtagataa |
316 |
Q |
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| T |
17106711 |
tctcaataaattcaaaacaaacaattatagtagataa |
17106675 |
T |
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