View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9904_low_11 (Length: 317)
Name: NF9904_low_11
Description: NF9904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9904_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 152 - 308
Target Start/End: Original strand, 32358987 - 32359137
Alignment:
| Q |
152 |
tgtgcaattgtaacaagctgctgcaaatttcattaaccctatacagctgaatataagcaagctttcatctttttattcaagttgtataactagaagctta |
251 |
Q |
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| T |
32358987 |
tgtgcaattgtaacaagctgctgcaaatttcattaaccctattcagctgaatat----aagctttcatctttttattcaagttgtataactagaagctta |
32359082 |
T |
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| Q |
252 |
atgctctgattgtatgataaactagtcatttgttggattttcaattattgctctctg |
308 |
Q |
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| T |
32359083 |
atg--ctgattgtatgataaactagtcatttgttgaattttcaattactgctctctg |
32359137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 47 - 150
Target Start/End: Original strand, 32358815 - 32358917
Alignment:
| Q |
47 |
tgtcttaggtattaaataatcttggaaagtgtaatgatttctgaaagagtgcaccagttttggaggaaagattgcacagatgtatgaaggttgtcaattc |
146 |
Q |
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| T |
32358815 |
tgtcttaggtattaaata-tcttggaaagcgtaatgatttctgaaagagtgcaccagttttggaggcaagattgcatagaagtatgaaggttgtcaactc |
32358913 |
T |
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| Q |
147 |
attt |
150 |
Q |
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|||| |
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| T |
32358914 |
attt |
32358917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 32372433 - 32372509
Alignment:
| Q |
80 |
atgatttctgaaagagtgcaccagttttggaggaaagattgcacagatgtatgaaggttgtcaattcatttatgtgc |
156 |
Q |
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| T |
32372433 |
atgatttctgaaagactacaccacttttggaggaaagattgcacagatgtatgaaggttgtcaactcatttttgtgc |
32372509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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