View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9904_low_13 (Length: 278)
Name: NF9904_low_13
Description: NF9904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9904_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 274
Target Start/End: Complemental strand, 36844896 - 36844639
Alignment:
| Q |
17 |
agaagaacagcaattggtgaacttccacctattggtacatcgcctctattgtctgtcatttttccagaagacaatgaagaagtcatattggagtaccgta |
116 |
Q |
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| T |
36844896 |
agaagaacagcaattggtgaacttccacctattggtacatcgcctctattgtctgtcatttttccagaagacagtgaggaagtcatattggagtaccgta |
36844797 |
T |
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| Q |
117 |
aaattatagctgaagattttctcagagcaaatccaaattacatatctccaactgttcggtatgaagattacgatgaggacaacaaagatatagtaaagga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36844796 |
aaattatagctgaagattttctcagagcaaatccaaattacatatctccaactgttcggtatgaagattacgatgaggacaacaaagatatagtaaagga |
36844697 |
T |
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| Q |
217 |
gtatatgaagaagatggaagaagaaatagcacaggaagctagtgccatctctgctcct |
274 |
Q |
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| T |
36844696 |
gtatatgaagaagatggaagaagaaatagcacaggaagctagtgctatcactgctcct |
36844639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 18930585 - 18930355
Alignment:
| Q |
17 |
agaagaacagcaattggtgaacttccacctattggtacatcgcctctattgtctgtcatttttccagaagacaatgaagaagtcatattggagtaccgta |
116 |
Q |
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||||||| || ||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18930585 |
agaagaaaagaaattgatgaacttcctcccattggtacatcgcctctattgtctgtcatttttccagaagacaatgaagaagtcatattggagtaccgta |
18930486 |
T |
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| Q |
117 |
aaattatagctgaagattttctcagagcaaatccaaattacatatctccaactgttcggtatgaagattacgatgaggacaacaaagatatagtaaagga |
216 |
Q |
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| T |
18930485 |
aaattatagccgaagattttctcagagctaatccaaattacatatttccaactgttcggtatgaagactatgacgaggacaacaaagatatagtaaagga |
18930386 |
T |
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| Q |
217 |
gtatatgaagaagatggaagaagaaatagca |
247 |
Q |
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| T |
18930385 |
gtatatgaagaagatggaagaagaaaaagca |
18930355 |
T |
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