View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9904_low_14 (Length: 270)
Name: NF9904_low_14
Description: NF9904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9904_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 39543298 - 39543539
Alignment:
| Q |
16 |
atgttggtccttcttctccaccagtgctgccacaataaatcctagccaatcccggaactggtcgatgctcttccacccaatcaattagacccaagaaatg |
115 |
Q |
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| T |
39543298 |
atgttggtccttcttctccaccagtgctgccacaataaatcctagccaatccaggaactggtcgatgctcttccacccaatcaattagacccaagaaatg |
39543397 |
T |
|
| Q |
116 |
ctcctctgtcaccgccgcctccaaaaactcatgaactcgatctgccacccaacataacggattatcaaccagctcttctgctaatctaccaccataggga |
215 |
Q |
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|||||||||||| || |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39543398 |
ctcctctgtcactgctgcctccaaaaactcatgaactcgatcagccacccaacatagcggattatcaaccagctcttctgctaatctaccaccataggga |
39543497 |
T |
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| Q |
216 |
atcgaaagcacattcccaaaatatgaattcataagctcttct |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
39543498 |
atcgaaagcacattcccaaaatatgaattcataagctcttct |
39543539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 39553317 - 39553558
Alignment:
| Q |
16 |
atgttggtccttcttctccaccagtgctgccacaataaatcctagccaatcccggaactggtcgatgctcttccacccaatcaattagacccaagaaatg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39553317 |
atgttggtccttcttctccaccagtgctgccacaataaatcctagccaatccaggaactggtcgatgctcttccacccaatcaattagacccaagaaatg |
39553416 |
T |
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| Q |
116 |
ctcctctgtcaccgccgcctccaaaaactcatgaactcgatctgccacccaacataacggattatcaaccagctcttctgctaatctaccaccataggga |
215 |
Q |
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| T |
39553417 |
ctcctctgtcactgctgcctccaaaaactcatgaactcgatcagccacccaacatagcggattatcaaccagctcttctgctaatctaccaccataggga |
39553516 |
T |
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| Q |
216 |
atcgaaagcacattcccaaaatatgaattcataagctcttct |
257 |
Q |
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| T |
39553517 |
atcgaaagcacattcccaaaatatgaattcataagctcttct |
39553558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 48 - 257
Target Start/End: Original strand, 39586456 - 39586665
Alignment:
| Q |
48 |
caataaatcctagccaatcccggaactggtcgatgctcttccacccaatcaattagacccaagaaatgctcctctgtcaccgccgcctccaaaaactcat |
147 |
Q |
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| T |
39586456 |
caataaatccttgccaatcccggaaccggtcgatgctcttccacccaatcaattagtcccaagaaatgttcttccgtgtccgcaacctccacaaactcat |
39586555 |
T |
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| Q |
148 |
gaactcgatctgccacccaacataacggattatcaaccagctcttctgctaatctaccaccatagggaatcgaaagcacattcccaaaatatgaattcat |
247 |
Q |
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||||| | |||| |||||||||||||| || ||||| || |||||| |||||||| || ||||||| | |||||||||||||||||||| ||| |||| |
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| T |
39586556 |
gaacttgctctgtcacccaacataacgacttttcaacaagttcttctattaatctacaactatagggagttgaaagcacattcccaaaatacgaactcat |
39586655 |
T |
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| Q |
248 |
aagctcttct |
257 |
Q |
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|| ||||||| |
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| T |
39586656 |
aaactcttct |
39586665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 121
Target Start/End: Original strand, 17503158 - 17503234
Alignment:
| Q |
45 |
ccacaataaatcctagccaatcccggaactggtcgatgctcttccacccaatcaattagacccaagaaatgctcctc |
121 |
Q |
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|||| ||||||| | |||||||| ||||| |||||||| |||||||||||||||| || || | |||||| ||||| |
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| T |
17503158 |
ccactataaatcttcgccaatccaggaacaggtcgatgtgcttccacccaatcaatgagccctaggaaatgttcctc |
17503234 |
T |
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