View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9904_low_17 (Length: 250)
Name: NF9904_low_17
Description: NF9904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9904_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 32944134 - 32944361
Alignment:
| Q |
1 |
acagtgctatattgccactatagctgctgtttgacactctgtactaaatagtgtaccgcaaagcaataacaatttgttgaaattctgctacgatatagcc |
100 |
Q |
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| T |
32944134 |
acagtgctatattgccactatagctgctgtttgaca------------tagtgtaccgcaaagcaataacaatttgttgaaattctgctacgatatagcc |
32944221 |
T |
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| Q |
101 |
actatttcataacactaacataattttgatgttttgattcaacaatacatgataactacaaacatgatattagtatatctgtacctgtctttatgttttg |
200 |
Q |
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| T |
32944222 |
actatttcataacactaacataattttgatgttttgattcaacaatacatgataactacaaacatgatattagtatatctgtacctgtctttatgttttg |
32944321 |
T |
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| Q |
201 |
acaagcaactgtcttttggtctttaattaactaccctttg |
240 |
Q |
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| T |
32944322 |
acaagcaactgtcttttggtctttaattaactaccctttg |
32944361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 7108195 - 7108146
Alignment:
| Q |
67 |
taacaatttgttgaaattctgctacgatatagccactatttcataacact |
116 |
Q |
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| T |
7108195 |
taacaatttgtttaaattctgctacgatatagccactatttaacaacact |
7108146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 11412613 - 11412672
Alignment:
| Q |
40 |
tgtactaaatagtgtaccgcaaagcaataacaatttgttgaaattctgctacgatatagc |
99 |
Q |
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| T |
11412613 |
tgtactaaatagtgtatcgcagaacaataaaaatttgtttgaattctgctatgatatagc |
11412672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 107
Target Start/End: Complemental strand, 16950268 - 16950232
Alignment:
| Q |
71 |
aatttgttgaaattctgctacgatatagccactattt |
107 |
Q |
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| T |
16950268 |
aatttgttcaaattctgctacgctatagccactattt |
16950232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 17223461 - 17223402
Alignment:
| Q |
40 |
tgtactaaatagtgtaccgcaaagcaataacaatttgttgaaattctgctacgatatagc |
99 |
Q |
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|||||||||| ||||| |||||| ||| ||||||||||| |||||| |||||| |||||| |
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| T |
17223461 |
tgtactaaatcgtgtatcgcaaaacaacaacaatttgttaaaattccgctacgctatagc |
17223402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 7347737 - 7347687
Alignment:
| Q |
40 |
tgtactaaatagtgtaccgcaaagcaataacaatttgttgaaattctgcta |
90 |
Q |
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|||||||||||||||| ||||| ||||| ||||||||| ||||||||||| |
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| T |
7347737 |
tgtactaaatagtgtattgcaaaacaatagcaatttgttcaaattctgcta |
7347687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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