View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9904_low_2 (Length: 706)
Name: NF9904_low_2
Description: NF9904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9904_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 192 - 694
Target Start/End: Complemental strand, 14855614 - 14855113
Alignment:
| Q |
192 |
tcgctgctttgatgcaagttctttattcatcgttaagcttgaagaaatctgaaactgatagcatattctttgcactgtagaggctatgagagttcacaaa |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
14855614 |
tcgctgctttgatgcaagttctttattcatcgttaagctcgaagaaatcagaaactggtagcatattctttgcattgtagaggctatgagagttcacaaa |
14855515 |
T |
|
| Q |
292 |
ttgtcgaaaaacaattagtgttagaattgcagaatatgagatctgatttgaagaaattaaattcaattagattgtgtttgattgagtacggagctcttgc |
391 |
Q |
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|| |||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
14855514 |
ttatcgaaaaatagttagtgttagaattgcagaatatgagatctgatttgaagaaatgaaattcaattagattgtgtttgattgagtacggagctcttgc |
14855415 |
T |
|
| Q |
392 |
agaagagatgaatatggaaagagagagttaccctttggggaaaattcaatgaacccattttttcatctttttgaatatgcaagaaatccatttgaaatca |
491 |
Q |
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|||| ||||||||||||||||||||||| | |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
14855414 |
agaatagatgaatatggaaagagagagtcagtttttggggaaaattcaatgaacctattttttcttctttttgaatatgcaagaaatccatttgaaatca |
14855315 |
T |
|
| Q |
492 |
gtgaagattttccttnnnnnnnnnnnnntctatgaaaaagctacatgtatttggattattgaggtgtgaccataaattttgttttaacaaaaatgatttc |
591 |
Q |
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| T |
14855314 |
atgaagatttttctt-aaaaatataaaatctatgaagaagctacatgtatttgaattattgaggtgtgattgtaaattttgttttaacaaaaatgatttc |
14855216 |
T |
|
| Q |
592 |
atgattctcagggatgaaggagatgcgtgtccttttaattttttaagttagtttgaataaaataaatataaaagttaatggtgtgcctctaaacctgtgt |
691 |
Q |
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| T |
14855215 |
atgattctcagagacgaaggagatgcgtgtccttttaattttttaagttagtttgaataaaataaatataaaaattaatggtgtgcctctaaacctgtgt |
14855116 |
T |
|
| Q |
692 |
aac |
694 |
Q |
| |
|
||| |
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| T |
14855115 |
aac |
14855113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 14855794 - 14855667
Alignment:
| Q |
13 |
cagagaggaaaagaataattagaaaatgacatagagtaattagaaataagacaacgtacttggtgtagaaatataggcttcctcaattttggtgcacaat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14855794 |
cagagaggaaaagaataattagaaaatgacatagagtaattagaaataagacaacgtacttggtgtagaaatataggcttcctcaattttggtgcacaat |
14855695 |
T |
|
| Q |
113 |
ttgagcatgtcgtgtgtattaaccgaca |
140 |
Q |
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| T |
14855694 |
ttgagcatgtcgtgtgtattaaccgaca |
14855667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 164; Significance: 3e-87; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 196 - 407
Target Start/End: Original strand, 42639390 - 42639601
Alignment:
| Q |
196 |
tgctttgatgcaagttctttattcatcgttaagcttgaagaaatctgaaactgatagcatattctttgcactgtagaggctatgagagttcacaaattgt |
295 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| ||| |||||| | |||||| |||||||||||||||||||||||||||||||||| || |
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| T |
42639390 |
tgctttgctgcaagttctttattcatcgttaagcttgaagatatcagaaactagtggcatatcctttgcactgtagaggctatgagagttcacaaatggt |
42639489 |
T |
|
| Q |
296 |
cgaaaaacaattagtgttagaattgcagaatatgagatctgatttgaagaaattaaattcaattagattgtgtttgattgagtacggagctcttgcagaa |
395 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
42639490 |
cgaaaaacagttagtgttagaattgcagaatatgagatctgatttgaagaaattagattcaactagattgtgtttgatggagtacggagctcttgcagaa |
42639589 |
T |
|
| Q |
396 |
gagatgaatatg |
407 |
Q |
| |
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|||||||||||| |
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| T |
42639590 |
gagatgaatatg |
42639601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 520 - 688
Target Start/End: Original strand, 42640736 - 42640904
Alignment:
| Q |
520 |
tctatgaaaaagctacatgtatttggattattgaggtgtgaccataaattttgttttaacaaaaatgatttcatgattctcagggatgaaggagatgcgt |
619 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42640736 |
tctatgaagaagctacatgtatttggattattgaggtgtgactgttgattttgttttaacaaaaatgatttcatgattctcagggacgaaggagatgcgt |
42640835 |
T |
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| Q |
620 |
gtccttttaattttttaagttagtttgaataaaataaatataaaagttaatggtgtgcctctaaacctg |
688 |
Q |
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| T |
42640836 |
gtccttttaattttttaagttagtttgaataaaataaatataaaaattaatggtgtgcctctaaacctg |
42640904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 463 - 506
Target Start/End: Original strand, 42639594 - 42639637
Alignment:
| Q |
463 |
tgaatatgcaagaaatccatttgaaatcagtgaagattttcctt |
506 |
Q |
| |
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| T |
42639594 |
tgaatatgtaagaaatccatttgaaattggtgaagattttcctt |
42639637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 399 - 566
Target Start/End: Complemental strand, 31871515 - 31871351
Alignment:
| Q |
399 |
atgaatatggaaagagagagttaccctttggggaaaattcaatgaacccattttttcatctttttgaatatgcaagaaatccatttgaaatcagtgaaga |
498 |
Q |
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|||||||||||||||||| | | | ||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31871515 |
atgaatatggaaagagag--tcaacttttggggaaaatttaatgaatccattttttcttctttttgaatatgcaagaaatccatttgaaatcggtgaaga |
31871418 |
T |
|
| Q |
499 |
ttttccttnnnnnnnnnnnnntctatgaaaaagctacatgtatttggattattgaggtgtgaccataa |
566 |
Q |
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|||||||| |||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
31871417 |
ttttcctt-aaaaaaataaaatctatgaagaagctacatgtatttggattattgaggtgtgactataa |
31871351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 393 - 485
Target Start/End: Original strand, 54848297 - 54848388
Alignment:
| Q |
393 |
gaagagatgaatatggaaagagagagttaccctttggggaaaattcaatgaacccattttttcatctttttgaatatgcaagaaatccatttg |
485 |
Q |
| |
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|||||||||||||| || ||||||||| | |||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||| |
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| T |
54848297 |
gaagagatgaatatagagagagagagtcagtttttggggaaaattcaatgaacccattattt-ttctttttgaatatgcaaggaatccatttg |
54848388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 666 - 694
Target Start/End: Original strand, 12809836 - 12809864
Alignment:
| Q |
666 |
ttaatggtgtgcctctaaacctgtgtaac |
694 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
12809836 |
ttaatggtgtgcctctaaacctgtgtaac |
12809864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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