View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9904_low_20 (Length: 228)
Name: NF9904_low_20
Description: NF9904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9904_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 43460281 - 43460502
Alignment:
| Q |
1 |
ctgaccctctgatattaagataatatcatcaaagagatcaaatgtctcaggagcaggttgaagtaaggacatgaatatagttgcttcagtgaggtgaaca |
100 |
Q |
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| T |
43460281 |
ctgaccctctgatattaagataatatcatcaaagagatcaaatgtctcaggagcaggttgaagtaaggacatgaatatggttgcttcagtgaggtgaaca |
43460380 |
T |
|
| Q |
101 |
acttgttgcaaccatttcactatctgatatgttgtggaactatcaagaccagttgatatttcatccatgaacaatgtttttgtaggaccaacaatcatct |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43460381 |
acttgttgcaaacatttcactatctgatatgttgtggaactatcaagaccagttgatatttcatccatgaacaatgtttttgtaggaccaacaatcatct |
43460480 |
T |
|
| Q |
201 |
cacctgtggcaaatccaaaact |
222 |
Q |
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|||||||| ||||||||||||| |
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| T |
43460481 |
cacctgtgccaaatccaaaact |
43460502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 2 - 207
Target Start/End: Complemental strand, 4498101 - 4497896
Alignment:
| Q |
2 |
tgaccctctgatattaagataatatcatcaaagagatcaaatgtctcaggagcaggttgaagtaaggacatgaatatagttgcttcagtgaggtgaacaa |
101 |
Q |
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| T |
4498101 |
tgaccctcagatataagaataatgtcatcaaaaagatcgaatgtctcaggagctggttgaagaagtgacattaagattgttccttcagttaggtgcacaa |
4498002 |
T |
|
| Q |
102 |
cttgttgcaaccatttcactatctgatatgttgtggaactatcaagaccagttgatatttcatccatgaacaatgtttttgtaggaccaacaatcatctc |
201 |
Q |
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| T |
4498001 |
tttgttgcaaacatttcacaatttgaaatgttgttgaactatcaagaccagttgatatttcatccatgaatagtgtttttgtaggaccaacaatcatttc |
4497902 |
T |
|
| Q |
202 |
acctgt |
207 |
Q |
| |
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|||||| |
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| T |
4497901 |
acctgt |
4497896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 198
Target Start/End: Complemental strand, 29774255 - 29774170
Alignment:
| Q |
113 |
catttcactatctgatatgttgtggaactatcaagaccagttgatatttcatccatgaacaatgtttttgtaggaccaacaatcat |
198 |
Q |
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|||||||||||||| ||||| || || |||||||| |||||||||||||| ||||| || | |||||| |||||||||| ||||| |
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| T |
29774255 |
catttcactatctggtatgtagtagagctatcaagcccagttgatatttcgtccataaagagcgtttttctaggaccaacgatcat |
29774170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 46449141 - 46449090
Alignment:
| Q |
122 |
atctgatatgttgtggaactatcaagaccagttgatatttcatccatgaaca |
173 |
Q |
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|
| T |
46449141 |
atctgatatgtagttgaactatctaaaccagttgatatctcatccatgaaca |
46449090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 51046661 - 51046604
Alignment:
| Q |
149 |
ccagttgatatttcatccatgaacaatgtttttgtaggaccaacaatcatctcacctg |
206 |
Q |
| |
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|||||||||||||||||||| || | || |||| ||||||| ||||||||||| |||| |
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|
| T |
51046661 |
ccagttgatatttcatccataaaaagtgcttttataggacctacaatcatctctcctg |
51046604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 198
Target Start/End: Original strand, 25525592 - 25525677
Alignment:
| Q |
113 |
catttcactatctgatatgttgtggaactatcaagaccagttgatatttcatccatgaacaatgtttttgtaggaccaacaatcat |
198 |
Q |
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||||| |||||||| |||| || || |||||||| |||||||||||||||||||| || || | |||| | || ||||||||||| |
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| T |
25525592 |
cattttactatctggaatgtggtagagctatcaagtccagttgatatttcatccataaataaagcttttcttggtccaacaatcat |
25525677 |
T |
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