View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9904_low_3 (Length: 530)

Name: NF9904_low_3
Description: NF9904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9904_low_3
NF9904_low_3
[»] chr5 (3 HSPs)
chr5 (19-521)||(7131733-7132235)
chr5 (33-465)||(7154283-7154715)
chr5 (33-470)||(7141508-7141945)


Alignment Details
Target: chr5 (Bit Score: 487; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 19 - 521
Target Start/End: Complemental strand, 7132235 - 7131733
Alignment:
Q  19 aattatacatcaggcataaacagtgggaatcaaacacaaatcacttttctttccaatagccagtccataatgttcagtcatatccaaatccataggtttg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     
T  7132235 aattatacatcaggcataaacagtgggaatcaaacacaaatcacttttctttccaatagccaatccataatgttcagtcatatccaaatccataggtttc 7132136  T
Q  119 atcttattaggaagttcccaattaaaatgataaagtaataaagccacaggaagcataataccagctataccaaattgcaagccagggcaaattcttctac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7132135 atcttattaggaagttcccaattaaaatgataaagtaataaagccacaggaagcataataccagctataccaaattgcaagccagggcaaattcttctac 7132036  T
Q  219 ctgctccaaaaggaagatattcaaaattattccctctaaaatcaatagtactaccttcaaatctctctggaataaacatctcagcatcagtccaatattg 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7132035 ctgctccaaaaggaagatattcaaaattattccctctaaaatcaatagaactaccttcaaatctctctggattaaacatctcagcatcagtccaatattg 7131936  T
Q  319 aggatcccttgccatagcccatacattaatcatgactttagtcttttttggtatatcataaccatcaatgttggttaattcagtgcattctctagggagt 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7131935 aggatcccttgccatagcccatacattaatcatgactttagtcttttttggtatatcataaccatcaatgttggttaattcagtgcattctctagggagt 7131836  T
Q  419 aataaaggagtaggtgagtgtaaccttaaggtctcttttatcactaattttaggtatggaagttcttgaatatcattttcagatataatttcttttcctt 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7131835 aataaaggagtaggtgagtgtaaccttaaggtctcttttatcactaattttaggtatggaagttcttgaatatcattttcagatataatttcttttcctt 7131736  T
Q  519 tgc 521  Q
    |||    
T  7131735 tgc 7131733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 33 - 465
Target Start/End: Complemental strand, 7154715 - 7154283
Alignment:
Q  33 cataaacagtgggaatcaaacacaaatcacttttctttccaatagccagtccataatgttcagtcatatccaaatccataggtttgatcttattaggaag 132  Q
    |||||||| | |||||||||||||| ||| ||| | ||||||  |||| ||||  || |||||||||||||||||||  |||||| |||| ||| || ||    
T  7154715 cataaacattaggaatcaaacacaactcattttcccttccaactgccaatccaacattttcagtcatatccaaatcctcaggtttcatctgatttggtag 7154616  T
Q  133 ttcccaattaaaatgataaagtaataaagccacaggaagcataataccagctataccaaattgcaagccagggcaaattcttctacctgctccaaaagga 232  Q
    |||||||||||||||||| ||||||||||| | ||||||||||| || |||||||||||||  || ||| || || |||||||| || || |||||||||    
T  7154615 ttcccaattaaaatgatatagtaataaagcaagaggaagcataacactagctataccaaatgacatgcctggacacattcttcttccagcaccaaaagga 7154516  T
Q  233 agatattcaaaattattccctctaaaatcaatagtactaccttcaaatctctctggaataaacatctcagcatcagtccaatattgaggatcccttgcca 332  Q
    | ||| ||||||||||| ||| | ||||||||   |||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||    
T  7154515 atatactcaaaattatttcctttgaaatcaatcaaactaccatcaaacctctctggaatgaacatctcagcatcagtccaatattgtggatctcttgcca 7154416  T
Q  333 tagcccatacattaatcatgactttagtcttttttggtatatcataaccatcaatgttggttaattcagtgcattctctagggagtaataaaggagtagg 432  Q
      |||||| |||| ||||| |||||||| ||||||||||| ||||||||||| ||| |||| ||||||||||||||||||||||  |||||||| | |||    
T  7154415 ctgcccatgcatttatcatcactttagtattttttggtatttcataaccatctatgatggtcaattcagtgcattctctagggaccaataaaggtgaagg 7154316  T
Q  433 tgagtgtaaccttaaggtctcttttatcactaa 465  Q
    || ||||||||| |  || ||||| ||||||||    
T  7154315 tgggtgtaacctcattgtttctttgatcactaa 7154283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 33 - 470
Target Start/End: Complemental strand, 7141945 - 7141508
Alignment:
Q  33 cataaacagtgggaatcaaacacaaatcacttttctttccaatagccagtccataatgttcagtcatatccaaatccataggtttgatcttattaggaag 132  Q
    |||||||||| |||||||||||||| ||| ||||| ||||||  |  |||||| ||| |||  ||||||||||||||  ||  || |||| ||| || ||    
T  7141945 cataaacagttggaatcaaacacaactcatttttccttccaactgttagtccaaaatcttctatcatatccaaatcctgagacttcatctgatttgggag 7141846  T
Q  133 ttcccaattaaaatgataaagtaataaagccacaggaagcataataccagctataccaaattgcaagccagggcaaattcttctacctgctccaaaagga 232  Q
    |||||| ||||| ||||| || |||| ||||| |||||  |||| ||  |||| ||||||   ||  || || || ||||| || || ||||| ||||||    
T  7141845 ttcccagttaaagtgatagagcaatagagccaaaggaaatataacacttgctaaaccaaaggtcatacccggacacattctccttccagctccgaaagga 7141746  T
Q  233 agatattcaaaattattccctctaaaatcaatagtactaccttcaaatctctctggaataaacatctcagcatcagtccaatattgaggatcccttgcca 332  Q
    |  || || || ||||| ||| | ||||||||   |||| | ||||| ||||||||||||||| ||||||||||| ||||||||| |||||| ||| | |    
T  7141745 atgtactcgaagttatttcctttgaaatcaatcaaactatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttccta 7141646  T
Q  333 tagcccatacattaatcatgactttagtcttttttggtatatcataaccatcaatgttggttaattcagtgcattctctagggagtaataaaggagtagg 432  Q
    | |||||  |||| || | |||| |||| ||||||||||||||||| ||||| || ||||||| ||| ||||    ||| || |  || ||||||| |||    
T  7141645 ttgcccacgcatttataaagactgtagtattttttggtatatcatacccatctattttggttagttctgtgctcaatcttggaaccaacaaaggagaagg 7141546  T
Q  433 tgagtgtaaccttaaggtctcttttatcactaatttta 470  Q
    || ||||||||| || || ||||| |||||||| ||||    
T  7141545 tgggtgtaacctcaatgtttctttgatcactaacttta 7141508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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