View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9904_low_4 (Length: 524)
Name: NF9904_low_4
Description: NF9904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9904_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 7 - 517
Target Start/End: Complemental strand, 26321815 - 26321305
Alignment:
| Q |
7 |
tggtggaattgaatctaatatggactgagctgaatgtgatggattttgtgaatttgttgcattttatacatgttattttcggtgaatttgtggaaatttt |
106 |
Q |
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| T |
26321815 |
tggtggaattgaatctaatatggactgagctgaatgtgatggattttgtgaatttgttgcattttatacatgttattttcggtgaatttgtggatatttt |
26321716 |
T |
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| Q |
107 |
ggatgtagaatgatttggggaagtctaatagagaatcaatcaaacagatggaaagaaataaaaaatagtcattttagttgttagaaagaatgcaaatgga |
206 |
Q |
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| T |
26321715 |
ggatgtagaatgatttggggaagtctaatagagaatcaagcaaacagatggaaagaaataaaaaatagtcattttagttgttagaaagaatgcaaatgga |
26321616 |
T |
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| Q |
207 |
ctaatgttgttgagcatttggggttgccatctttctggaagttatcttttgttcttctttcatgattgtgtaattttactgttaaatttctgtttctctg |
306 |
Q |
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| T |
26321615 |
ctaatgttgttgagcatttggggttgccatctttctggaagttatcttttgttcttctttcatgattgtgtaattttactgttaaatttgtgtttctctg |
26321516 |
T |
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| Q |
307 |
aatgaatgtaatatgttctcatttgggttagtttttaggaggaaaaacactgatgatggaaaaatataatgtttaaaaaatgagattttgaaattgggtt |
406 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26321515 |
aatgaatgtactatgttctcatttgggttagtttttaggaggaaaaacactgatgatggaaaaatataatgtttaaaaaatgagattttgaaattgggtt |
26321416 |
T |
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| Q |
407 |
tgtgagatcattgtaagtaatatagaccatagtaaggtaccacttggtggaattaatgctagggattgattatagttaggataaaagcacatagatacac |
506 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26321415 |
tgtgagatcattgtaagtaatatagaccatagtgaggtaccacttggtggaattaatgttagggattgattatagttaggataaaagcacatagatacac |
26321316 |
T |
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| Q |
507 |
ctatgcttctc |
517 |
Q |
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| T |
26321315 |
ctctgcttctc |
26321305 |
T |
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