View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9904_low_9 (Length: 353)
Name: NF9904_low_9
Description: NF9904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9904_low_9 |
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| [»] scaffold0449 (1 HSPs) |
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Alignment Details
Target: scaffold0449 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0449
Description:
Target: scaffold0449; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 4987 - 4915
Alignment:
| Q |
17 |
atttacaacaataagtattattatttacacaaagtagtatgaagcaacatgtcataagcattctccataagac |
89 |
Q |
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| T |
4987 |
atttacaacaataagtattactatttacacaaagtagtatgaagcaacatgccataagcattctccataagac |
4915 |
T |
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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 48905311 - 48905364
Alignment:
| Q |
21 |
acaacaataagtattattatttacacaaagtagtatgaagcaacatgtcataag |
74 |
Q |
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|||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
48905311 |
acaacaataagtattactacttacacaaagtagtatgaagcaacatgtcataag |
48905364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 80
Target Start/End: Original strand, 32014693 - 32014728
Alignment:
| Q |
45 |
acaaagtagtatgaagcaacatgtcataagcattct |
80 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
32014693 |
acaaagtagtatgaagcaacatgtcataagcattct |
32014728 |
T |
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