View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9905_high_1 (Length: 707)

Name: NF9905_high_1
Description: NF9905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9905_high_1
NF9905_high_1
[»] chr4 (1 HSPs)
chr4 (10-690)||(9495799-9496493)


Alignment Details
Target: chr4 (Bit Score: 620; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 10 - 690
Target Start/End: Complemental strand, 9496493 - 9495799
Alignment:
Q  10 aggaggagcacagaggcttttatgatcaacacatatagacctttccctagacaagttaggaataattattggccttagaattggatatgtatgtgaatca 109  Q
    ||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9496493 aggaggaacacaagggcttttatgatcaacacatatagacctttccctagacaagttaggaataattattggccttagaattggatatggatgtgaatca 9496394  T
Q  110 ccagccttcccttcaatttctccaggtaagttattacccaaagaactagaagcatcatcatccactgctgcatctgtaactgatgaagaatgcaacactt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9496393 ccagccttcccttcaatttctccaggtaagttattacccaaagaactagaagcatcatcatccactgctgaatctgtaactgatgaagaatgcaacactt 9496294  T
Q  210 tcccaggtacatcattaccagacattacataacc--------------cagtccctacaggatcaaagggagagcaaaatgttgcagctgttggagatgc 295  Q
    ||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9496293 tcccaggtacatcattaccagacattacataaccaacagtctgggtcccagtccctacaggatcaaagggagagcaaaatgttgcagctgttggagatgc 9496194  T
Q  296 taaaccatttgtactatatgaagaagagaaagcaaccatatcatccactgtcctattcatgtcagcttcacgcaaagcccataaactgtcatcagagctg 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9496193 taaaccatttgtactatatgaagaagagaaagcaaccatatcatccactgtcctattcatgtcagcttcacgcaaagcccataaactgtcatcagagctg 9496094  T
Q  396 agagagggaggccgagaaaaaccttttcctggattttcagaagggttccagtacattacaccgccaccaaagtattgattataatctataccagaaacag 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9496093 agagagggaggccgagaaaaaccttttcctggattttcagaagggttccagtacattacaccgccaccaaagtattgattataatctataccagaaacag 9495994  T
Q  496 catgaaagtcatactcttcctctgatacatagaggttgtcaaattcatctgtgaactgtgtatttatttggtcaggtaaatctaatgtatccccagagta 595  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9495993 catgaaagtcatactcttcctctgatacatagaggttgtcaaattcatctgtgaactgtgtatttatttggtcaggtaaatccaatgtatccccagagta 9495894  T
Q  596 cctcctttcatcatcatgagttgttgcatcaacctgcatgctgtgaacagccagccctttcgaaaatttacattgccgcctagacataaaactag 690  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9495893 cctcctttcatcatcatgagttgttgcatcaacctgcatgctgtgaacagccagcccttttgaaaatttacattgccgcctagacataaaactag 9495799  T

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