View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9905_high_4 (Length: 393)

Name: NF9905_high_4
Description: NF9905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9905_high_4
NF9905_high_4
[»] chr3 (9 HSPs)
chr3 (16-378)||(47763911-47764266)
chr3 (134-287)||(50719089-50719236)
chr3 (134-287)||(50793612-50793759)
chr3 (240-284)||(50719046-50719090)
chr3 (240-284)||(50793758-50793802)
chr3 (11-117)||(17681790-17681896)
chr3 (45-91)||(53351960-53352006)
chr3 (82-118)||(24761961-24761997)
chr3 (82-118)||(24815937-24815973)
[»] chr1 (4 HSPs)
chr1 (158-294)||(52945841-52945976)
chr1 (158-294)||(52938209-52938344)
chr1 (163-296)||(44513221-44513354)
chr1 (11-117)||(25223242-25223349)
[»] chr8 (6 HSPs)
chr8 (134-283)||(9885367-9885511)
chr8 (163-283)||(4969940-4970060)
chr8 (11-122)||(5662584-5662695)
chr8 (11-117)||(8158484-8158590)
chr8 (248-294)||(9885522-9885569)
chr8 (248-294)||(4969882-4969929)
[»] chr2 (4 HSPs)
chr2 (163-287)||(27534858-27534982)
chr2 (11-117)||(24454538-24454644)
chr2 (12-78)||(997882-997948)
chr2 (248-296)||(27534772-27534821)
[»] chr7 (2 HSPs)
chr7 (163-282)||(2439964-2440083)
chr7 (82-117)||(26910044-26910079)
[»] chr5 (2 HSPs)
chr5 (11-117)||(22004448-22004554)
chr5 (11-117)||(30463042-30463149)
[»] scaffold0096 (1 HSPs)
scaffold0096 (11-117)||(27433-27539)
[»] chr4 (1 HSPs)
chr4 (65-110)||(38014371-38014415)


Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 16 - 378
Target Start/End: Original strand, 47763911 - 47764266
Alignment:
Q  16 gatgagatgaatgcctagccagatgatttgatccaacggacctccttgattggcgcctaaaaattctaggtttaggttttgcaaagttattagcaatgtt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  47763911 gatgagatgaatgcctagccagatgatttgatccaacggacctccttgattggcgcctaaaaattctagatttaggttttgcaaagttattagcaatgtt 47764010  T
Q  116 aagtagggattaaatataaactagaacgccgacccgtgcctcgcggggcacgggtcatataaattgtagaaactaaaaataatatagaaatttgtataag 215  Q
    ||||||| |||| |||||||||||||||||  |||||||       ||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  47764011 aagtagg-attagatataaactagaacgccctcccgtgca------ggcacgggtcatatagattgtagaaattaaaaataatatagaaatttgtataag 47764103  T
Q  216 tcttcatagcagtaagtcattagtacggtgataaagatagtgtattacatcattcatacaaataaaaaagactataaatctatataattctatgaatggc 315  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47764104 tcttcatagcagtaagtcattagtacggtaataaagatagtgtattacatcattcatacaaataaaaaagactataaatctatataattctatgaatggc 47764203  T
Q  316 attccaaaaaatagcaaatcattaactcccagttcaatggaataaaaatcaatagtagtatat 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47764204 attccaaaaaatagcaaatcattaactcccagttcaatggaataaaaatcaatagtagtatat 47764266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 134 - 287
Target Start/End: Complemental strand, 50719236 - 50719089
Alignment:
Q  134 aactagaacgccgacccgtgcctcgcggggcacgggtcatataaattgtagaaactaaaaataatatagaaatttgtataagtcttcatagcagtaagtc 233  Q
    |||||||||||||||||||||  |||     |||||||||||| |||||||||||  | ||||||||| |||| | || |||    | ||||| ||||||    
T  50719236 aactagaacgccgacccgtgcgccgc-----acgggtcatatagattgtagaaaccgacaataatataaaaatctatagaag----cgtagcaataagtc 50719146  T
Q  234 attagtacggt---gataaagatagtgtattacatcattcatacaaataaaaaagac 287  Q
    ||||||||  |   ||| |||||||||||||||||||||||||||||||||||||||    
T  50719145 attagtacaataatgatgaagatagtgtattacatcattcatacaaataaaaaagac 50719089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 134 - 287
Target Start/End: Original strand, 50793612 - 50793759
Alignment:
Q  134 aactagaacgccgacccgtgcctcgcggggcacgggtcatataaattgtagaaactaaaaataatatagaaatttgtataagtcttcatagcagtaagtc 233  Q
    |||||||||||||||||||||  |||     |||||||||||| |||||||||||  | ||||||||| |||| | || |||    | ||||| ||||||    
T  50793612 aactagaacgccgacccgtgcgccgc-----acgggtcatatagattgtagaaaccgacaataatataaaaatctatagaag----cgtagcaataagtc 50793702  T
Q  234 attagtacggt---gataaagatagtgtattacatcattcatacaaataaaaaagac 287  Q
    ||||||||  |   ||| |||||||||||||||||||||||||||||||||||||||    
T  50793703 attagtacaataatgatgaagatagtgtattacatcattcatacaaataaaaaagac 50793759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 50719090 - 50719046
Alignment:
Q  240 acggtgataaagatagtgtattacatcattcatacaaataaaaaa 284  Q
    ||||| ||||||||||| ||||||||| |||||||||||||||||    
T  50719090 acggtaataaagatagtatattacatctttcatacaaataaaaaa 50719046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 50793758 - 50793802
Alignment:
Q  240 acggtgataaagatagtgtattacatcattcatacaaataaaaaa 284  Q
    ||||| ||||||||||| ||||||||| |||||||||||||||||    
T  50793758 acggtaataaagatagtatattacatctttcatacaaataaaaaa 50793802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 17681896 - 17681790
Alignment:
Q  11 caaaggatgagatgaatgcctagccagatgatttgatccaacggacctccttgattggcgcctaaaaattctaggtttaggttttgcaaagttattagca 110  Q
    |||||||||||||| |||| || ||| |||||  |||||||||| || ||||| |||| ||| |||   | |||||||||| |||||||| | |||| ||    
T  17681896 caaaggatgagatgcatgcttaaccaaatgatgagatccaacggccccccttgtttggagccaaaaccatttaggtttagggtttgcaaaatcattaaca 17681797  T
Q  111 atgttaa 117  Q
    |||||||    
T  17681796 atgttaa 17681790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 53351960 - 53352006
Alignment:
Q  45 gatccaacggacctccttgattggcgcctaaaaattctaggtttagg 91  Q
    ||||||||||||| ||||||||||||||||||   ||||||||||||    
T  53351960 gatccaacggaccaccttgattggcgcctaaactatctaggtttagg 53352006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 24761961 - 24761997
Alignment:
Q  82 taggtttaggttttgcaaagttattagcaatgttaag 118  Q
    |||||||||| |||||||||| |||||||||||||||    
T  24761961 taggtttagggtttgcaaagtcattagcaatgttaag 24761997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 118
Target Start/End: Complemental strand, 24815973 - 24815937
Alignment:
Q  82 taggtttaggttttgcaaagttattagcaatgttaag 118  Q
    |||||||||| |||||||||| |||||||||||||||    
T  24815973 taggtttagggtttgcaaagtcattagcaatgttaag 24815937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 158 - 294
Target Start/End: Complemental strand, 52945976 - 52945841
Alignment:
Q  158 gcggggcacgggtcatataaattgtagaaactaaaaataatatagaaatttgtataagtcttcatagcagtaagtcattagtacggtgataaagatagtg 257  Q
    |||| |||||||||||||| |||||||||||  | ||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||    
T  52945976 gcggcgcacgggtcatatagattgtagaaaccgacaataatatagaaatttgtataagccttcatagcaataagtcattagtacggtaataaagatagtg 52945877  T
Q  258 tattacatcattcatacaaataaaaaagactataaat 294  Q
    |||||||||||||||||||||| ||||||||||||||    
T  52945876 tattacatcattcatacaaata-aaaagactataaat 52945841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 158 - 294
Target Start/End: Complemental strand, 52938344 - 52938209
Alignment:
Q  158 gcggggcacgggtcatataaattgtagaaactaaaaataatatagaaatttgtataagtcttcatagcagtaagtcattagtacggtgataaagatagtg 257  Q
    |||| |||||||||||||| |||||||||||  | ||||||||||||||||||||||| |||||||||| ||||||||||||| ||| ||||||||||||    
T  52938344 gcggcgcacgggtcatatagattgtagaaaccgacaataatatagaaatttgtataagccttcatagcaataagtcattagtatggtaataaagatagtg 52938245  T
Q  258 tattacatcattcatacaaataaaaaagactataaat 294  Q
    |||||||||||||||||||||| ||||||||||||||    
T  52938244 tattacatcattcatacaaata-aaaagactataaat 52938209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 163 - 296
Target Start/End: Complemental strand, 44513354 - 44513221
Alignment:
Q  163 gcacgggtcatataaattgtagaaactaaaaataatatagaaatttgtataagtcttcatagcagtaagtcattagtacggtgataaagatagtgtatta 262  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||| ||| | ||| ||||||||||||| ||||||||||| |||||    
T  44513354 gcacgggtcatatagattgtagaaactaacaataatatagaaatttgtatatgtcttcgtagaaataaatcattagtacggtaataaagatagtttatta 44513255  T
Q  263 catcattcatacaaataaaaaagactataaatct 296  Q
    |||||||  || |||||||||||| |||||||||    
T  44513254 catcattggtataaataaaaaagagtataaatct 44513221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 25223349 - 25223242
Alignment:
Q  11 caaaggatgagatgaatgcctagccagatgatttgatccaacggacctccttgattggcgcctaaaaattctaggttta-ggttttgcaaagttattagc 109  Q
    ||||||||||||||||||| |||| || | |||||||| |||||  |||||| ||||||||| ||||   |||| |||| |||||||||| || ||||||    
T  25223349 caaaggatgagatgaatgcttagctagctcatttgatcaaacggctctccttaattggcgcccaaaatggctagctttagggttttgcaaggtaattagc 25223250  T
Q  110 aatgttaa 117  Q
    | ||||||    
T  25223249 attgttaa 25223242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 134 - 283
Target Start/End: Original strand, 9885367 - 9885511
Alignment:
Q  134 aactagaacgccgacccgtgcctcgcggggcacgggtcatataaattgtagaaactaaaaataatatagaaatttgtataagtcttcatagcagtaagtc 233  Q
    |||||||||||||||||||||  |||     |||||||||||| |||||| ||||  | |||||||| |||||||||| |||||||||||||| ||||||    
T  9885367 aactagaacgccgacccgtgcgccgc-----acgggtcatatagattgtacaaaccgacaataatattgaaatttgtagaagtcttcatagcaataagtc 9885461  T
Q  234 attagtacggtgataaagatagtgtattacatcattcatacaaataaaaa 283  Q
    |||||||| || |||||||||||| |||||||||||||||||||||||||    
T  9885462 attagtacagtaataaagatagtgcattacatcattcatacaaataaaaa 9885511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 163 - 283
Target Start/End: Complemental strand, 4970060 - 4969940
Alignment:
Q  163 gcacgggtcatataaattgtagaaactaaaaataatatagaaatttgtataagtcttcatagcagtaagtcattagtacggtgataaagatagtgtatta 262  Q
    |||||||||||||| |||||| ||||  | |||||||| |||||||||| |||||||||||||| |||||||||||||| || |||||||||||| ||||    
T  4970060 gcacgggtcatatagattgtacaaaccgacaataatattgaaatttgtagaagtcttcatagcaataagtcattagtacagtaataaagatagtgcatta 4969961  T
Q  263 catcattcatacaaataaaaa 283  Q
    |||||||||||||||||||||    
T  4969960 catcattcatacaaataaaaa 4969940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 5662695 - 5662584
Alignment:
Q  11 caaaggatgagatgaatgcctagccagatgatttgatccaacggacctccttgattggcgcctaaaaattctaggtttaggttttgcaaagttattagca 110  Q
    |||||||||||||||||||||||||| |||||  |||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||    
T  5662695 caaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgcctaaaaaatctaggtttagggtttgcaaagtcattagca 5662596  T
Q  111 atgttaagtagg 122  Q
    || |||| ||||    
T  5662595 atattaattagg 5662584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 8158590 - 8158484
Alignment:
Q  11 caaaggatgagatgaatgcctagccagatgatttgatccaacggacctccttgattggcgcctaaaaattctaggtttaggttttgcaaagttattagca 110  Q
    ||||||||||||||||||  |||| || | |||||||| ||||| ||| ||| ||||||||| ||||    |||||||||||||||||| || |||||||    
T  8158590 caaaggatgagatgaatgattagctagctcatttgatcaaacggccctgcttaattggcgcccaaaatacttaggtttaggttttgcaaggtaattagca 8158491  T
Q  111 atgttaa 117  Q
     ||||||    
T  8158490 ttgttaa 8158484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 294
Target Start/End: Original strand, 9885522 - 9885569
Alignment:
Q  248 aaagatagtgtattacatcattcatacaaat-aaaaaagactataaat 294  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  9885522 aaagatagtatattacatcattcatacaaataaaaaaagactataaat 9885569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 294
Target Start/End: Complemental strand, 4969929 - 4969882
Alignment:
Q  248 aaagatagtgtattacatcattcatacaaataa-aaaagactataaat 294  Q
    ||||||||| ||||||||||||| ||||||||| ||||||||||||||    
T  4969929 aaagatagtatattacatcattcgtacaaataaaaaaagactataaat 4969882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 7e-31; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 163 - 287
Target Start/End: Complemental strand, 27534982 - 27534858
Alignment:
Q  163 gcacgggtcatataaattgtagaaactaaaaataatatagaaatttgtataagtcttcatagcagtaagtcattagtacggtgataaagatagtgtatta 262  Q
    |||||||||||||| |||||| ||||| | |||||||| |||||  ||| || ||||||||||| ||||||||||||||  | |||||||||||| ||||    
T  27534982 gcacgggtcatatagattgtacaaactgacaataatatcgaaatcagtagaaatcttcatagcaataagtcattagtacaataataaagatagtgcatta 27534883  T
Q  263 catcattcatacaaataaaaaagac 287  Q
    |||||||||||||||||||||||||    
T  27534882 catcattcatacaaataaaaaagac 27534858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 24454644 - 24454538
Alignment:
Q  11 caaaggatgagatgaatgcctagccagatgatttgatccaacggacctccttgattggcgcctaaaaattctaggtttaggttttgcaaagttattagca 110  Q
    |||||||||||||||||| | ||||| |||||  |||||||||| |||||||| |||||||||||||| | |||||||||| ||||||| | | ||||||    
T  24454644 caaaggatgagatgaatgtcaagccaaatgatgagatccaacggccctccttgtttggcgcctaaaaaatttaggtttaggatttgcaatggtcttagca 24454545  T
Q  111 atgttaa 117  Q
    |||||||    
T  24454544 atgttaa 24454538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 997948 - 997882
Alignment:
Q  12 aaaggatgagatgaatgcctagccagatgatttgatccaacggacctccttgattggcgcctaaaaa 78  Q
    |||||||||||||||||| ||| |||||||||||||| ||||| | ||||| |||||||||||||||    
T  997948 aaaggatgagatgaatgcttagtcagatgatttgatcaaacggccatccttaattggcgcctaaaaa 997882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 296
Target Start/End: Complemental strand, 27534821 - 27534772
Alignment:
Q  248 aaagatagtgtattacatcattcatacaaataa-aaaagactataaatct 296  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  27534821 aaagatagtatattacatcattcatacaaataaaaaaagactataaatct 27534772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 163 - 282
Target Start/End: Complemental strand, 2440083 - 2439964
Alignment:
Q  163 gcacgggtcatataaattgtagaaactaaaaataatatagaaatttgtataagtcttcatagcagtaagtcattagtacggtgataaagatagtgtatta 262  Q
    |||||||||||||| |||||||||||  | |||| ||||||||| |||||||||||||||| || ||||||||||||||| | |||||||||||||||||    
T  2440083 gcacgggtcatatagattgtagaaaccgacaatattatagaaatatgtataagtcttcataacaataagtcattagtacgataataaagatagtgtatta 2439984  T
Q  263 catcattcatacaaataaaa 282  Q
    ||| ||  | ||||||||||    
T  2439983 cattatataaacaaataaaa 2439964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 82 - 117
Target Start/End: Original strand, 26910044 - 26910079
Alignment:
Q  82 taggtttaggttttgcaaagttattagcaatgttaa 117  Q
    |||||||||| |||||||||||||||||||||||||    
T  26910044 taggtttagggtttgcaaagttattagcaatgttaa 26910079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 117
Target Start/End: Original strand, 22004448 - 22004554
Alignment:
Q  11 caaaggatgagatgaatgcctagccagatgatttgatccaacggacctccttgattggcgcctaaaaattctaggtttaggttttgcaaagttattagca 110  Q
    |||||||||| ||||||||  ||||| |||||  ||||||||||||| ||||||||||||||||||   |||||||||||| |||||||| | |||||||    
T  22004448 caaaggatgatatgaatgctgagccaaatgatgagatccaacggaccaccttgattggcgcctaaactatctaggtttagggtttgcaaaatcattagca 22004547  T
Q  111 atgttaa 117  Q
    |||||||    
T  22004548 atgttaa 22004554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 117
Target Start/End: Original strand, 30463042 - 30463149
Alignment:
Q  11 caaaggatgagatgaatgcctagccagatgatttgatccaacggacctccttgattggcgcctaaaaattctaggttta-ggttttgcaaagttattagc 109  Q
    ||||||||||||||||||| |||| || | |||||||| |||||  |||||| ||||||||| ||||   ||||||||| |||||||||| || ||||||    
T  30463042 caaaggatgagatgaatgcttagctagctcatttgatcaaacggctctccttaattggcgcccaaaatggctaggtttagggttttgcaaggtaattagc 30463141  T
Q  110 aatgttaa 117  Q
    | ||||||    
T  30463142 attgttaa 30463149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 27539 - 27433
Alignment:
Q  11 caaaggatgagatgaatgcctagccagatgatttgatccaacggacctccttgattggcgcctaaaaattctaggtttaggttttgcaaagttattagca 110  Q
    |||||||||||||| |||| |||||| |||||  |||||||||| |  ||||| |||| ||| |||   | |||||||||| |||||||| | |||||||    
T  27539 caaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgtttggagccaaaaccatttaggtttagggtttgcaaaatcattagca 27440  T
Q  111 atgttaa 117  Q
    |||||||    
T  27439 atgttaa 27433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 38014415 - 38014371
Alignment:
Q  65 ttggcgcctaaaaattctaggtttaggttttgcaaagttattagca 110  Q
    ||||||||||||||| |||||||||||||||| ||||| |||||||    
T  38014415 ttggcgcctaaaaat-ctaggtttaggttttgtaaagtcattagca 38014371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University