View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9905_high_6 (Length: 345)
Name: NF9905_high_6
Description: NF9905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9905_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 20 - 324
Target Start/End: Original strand, 46731681 - 46731978
Alignment:
| Q |
20 |
caaatcacgagggctaaggtgggtagagaaatagtagtatattcaatatttatattgatatgatatgattaatagtatttcacttttgttaattattata |
119 |
Q |
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| T |
46731681 |
caaatcacgagggctaaggtgggtagagaaatagtagtatattcaatatttatattcatatgatatgattaatagtatttcacttttgttaattattata |
46731780 |
T |
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| Q |
120 |
agcataggcataacatcatcaatagttgtaatattttgtctatattatctgtgcaatgtgcatactgaatgataatagaaccaaaaaaggtacggatatt |
219 |
Q |
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| T |
46731781 |
agcataggcataacatcatcaatagttgtaatattttgtctatattatc-------tgtgcatactgaatgataatagaaccaaaaaaggtacggatatt |
46731873 |
T |
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| Q |
220 |
ttgccttatgtctttgattgtcatatatcacttctactggcagaggttgttatctttgtgcactccaaaacaaatctgaccctctgccgtgccgtgctgt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46731874 |
ttgccttatgtctttgattgtcatatatcacttctactggcagaggttgttatctttgtgcactccaaaacaaatctgaccctctgccgtgccgtgctgt |
46731973 |
T |
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