View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9905_high_8 (Length: 276)
Name: NF9905_high_8
Description: NF9905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9905_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 2175030 - 2174771
Alignment:
| Q |
1 |
cgttttttgtcctaggcaccctaagcaaatgtcagctttggttttcataagttgattatgnnnnnnngtttgttttgtgttaacgccccggg--tcctag |
98 |
Q |
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| T |
2175030 |
cgttttttgtcctaggcaccctaagcaaatgtcagctttggctttcataagttgattatgtttttttgtttgttttgtgttaacaccccgggggtcc-ag |
2174932 |
T |
|
| Q |
99 |
aggaaggggaccctattaatccagagttttgttaggaggtaagtttaatatgacaagaattgnnnnnnnaggaatcgaactcagattctcctgaacaatt |
198 |
Q |
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| T |
2174931 |
gggaagaggaccctattaatccggagttttgttaggaggtaagtttaatatgacaagaattgttttcttaggaatcgaactcagattctcctgaacaatt |
2174832 |
T |
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| Q |
199 |
cgttcaaatgggagtttatttgagttcaataatttgttacaaattgattatgttaaagatg |
259 |
Q |
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| T |
2174831 |
cgttcaaatgggagtttatttgagttcaattatttgttataaattgattatattaaagatg |
2174771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 5 - 160
Target Start/End: Complemental strand, 2151338 - 2151185
Alignment:
| Q |
5 |
ttttgtcctaggcaccctaagcaaatgtcagctttggttttcataagttgattatgnnnnnnngtttgttttgtgttaacgccccgggtcctagaggaag |
104 |
Q |
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| T |
2151338 |
ttttgtcctaggcaccccaagcaaatgtcagccttggctttcataagttgatt--gtttttttctttgttttgtgttaacgctccgggtcctaaggcaag |
2151241 |
T |
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| Q |
105 |
gggaccctattaatccagagttttgttaggaggtaagtttaatatgacaagaattg |
160 |
Q |
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| T |
2151240 |
gggacccgagtaatccggagttttgttaggaggtaagttaaatatgacaataattg |
2151185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 143
Target Start/End: Complemental strand, 2183934 - 2183798
Alignment:
| Q |
5 |
ttttgtcctaggcaccctaagcaaatgtcagctttggttttcataagttgattatgnnnnnnngtttgttttgtgttaacgccccgggtcctagaggaag |
104 |
Q |
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||||||||| ||||||| |||||||| ||||| ||||||||||||| ||||||||| ||||||||||||||||||| |||||| || | ||||| |
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| T |
2183934 |
ttttgtcctgggcaccccaagcaaatctcagccttggttttcataaattgattatg-tttcttgtttgttttgtgttaacgctccgggt-cttggggaag |
2183837 |
T |
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| Q |
105 |
gggaccctattaatccagagttttgttaggaggtaagtt |
143 |
Q |
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||||| ||| |||||| ||||||||| | ||||||||| |
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| T |
2183836 |
gggactctagtaatccgaagttttgttggaaggtaagtt |
2183798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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