View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9905_low_10 (Length: 252)
Name: NF9905_low_10
Description: NF9905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9905_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 1034659 - 1034425
Alignment:
| Q |
1 |
ttgagggatatttgtgtaaattttatattagctgggagagacacttcttcagttgctttgagctggtttttctggttggttgatcagaatcatgaagttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1034659 |
ttgagggatatttgtgtaaattttatattagctgggagagacacttcttcagttgctttgagctggtttttctggttggttgatcagaatcatgaagttg |
1034560 |
T |
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| Q |
101 |
aggagaaaatattagaagaaatttgcagggtggtggatatcaagaaggatgagtttgatgattgtttgagatttaggtcagaggagattaagaagatgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1034559 |
aggagaaaatattagaagaaatttgcagggtggtggatatcaagaaggatgagtttgatgattgtttgagatttaggtcacaggagattaagaagatgga |
1034460 |
T |
|
| Q |
201 |
ttatttgcatgctgctctttcagaagctcttagat |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
1034459 |
ttatttgcatgctgctctttcagaagctcttagat |
1034425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 146; Significance: 5e-77; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 13897602 - 13897356
Alignment:
| Q |
1 |
ttgagggatatttgtgtaaattttatattagctgggagagacacttcttcagttgctttgagctggtttttctggttggttgatcagaatcatgaagttg |
100 |
Q |
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| T |
13897602 |
ttgagggatatttgtgtaaatttcatattagctgggagagacacttcttcagttgctttaagctggtttttctggttggttgatcagaatcatgaagttg |
13897503 |
T |
|
| Q |
101 |
aggagaaaatattagaagaaatttgcagggt------------ggtggatatcaagaaggatgagtttgatgattgtttgagatttaggtcagaggagat |
188 |
Q |
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| T |
13897502 |
aggagaaaatattagaagagatttgcagggttgtgtgtcaaagggaggatattaataaggaagtgtttaatgattctttgagattcaagcctgaggagat |
13897403 |
T |
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| Q |
189 |
taagaagatggattatttgcatgctgctctttcagaagctcttagat |
235 |
Q |
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| T |
13897402 |
taagaagatggattatttgcatgcagctctttcagaagctcttagat |
13897356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 13887608 - 13887738
Alignment:
| Q |
1 |
ttgagggatatttgtgtaaattttatattagctgggagagacacttcttcagttgctttgagctggtttttctggttggttgatcagaatcatgaagttg |
100 |
Q |
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||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||| | |
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| T |
13887608 |
ttgagggatatatgtgtaagttttatattagctgggagagacacttcttcagttgctttaagctggtttttctggttacttaatcagaatcatgaagtgg |
13887707 |
T |
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| Q |
101 |
aggagaaaatattagaagaaatttgcagggt |
131 |
Q |
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| T |
13887708 |
aggagaaaatattagaagagatttgcagggt |
13887738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 13887806 - 13887860
Alignment:
| Q |
181 |
gaggagattaagaagatggattatttgcatgctgctctttcagaagctcttagat |
235 |
Q |
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| T |
13887806 |
gaggagattaagaagatgggttatttgcatgctgctctttcagaaactcttagat |
13887860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 135
Target Start/End: Complemental strand, 7295635 - 7295502
Alignment:
| Q |
2 |
tgagggatatttgtgtaaattttatattagctgggagagacacttcttc---agttgctttgagctggtttttctggttggttgatcagaatcatgaagt |
98 |
Q |
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|||||||||| ||| | ||||| |||||||| ||||||||||||||||| |||||||||||| || ||||||||||| ||||||| ||| ||||| | |
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| T |
7295635 |
tgagggatatatgtttgaatttcatattagccgggagagacacttcttctttagttgctttgaggcggcttttctggttgcttgatcataataatgaaat |
7295536 |
T |
|
| Q |
99 |
tgaggagaaaatattagaagaaatttgcagggtggtg |
135 |
Q |
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||||| |||| ||| ||| ||||||||||||||| |
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| T |
7295535 |
ggaggaaaaaa---tagtagagatttgcagggtggtg |
7295502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 135
Target Start/End: Complemental strand, 28666938 - 28666805
Alignment:
| Q |
2 |
tgagggatatttgtgtaaattttatattagctgggagagacacttcttcagttgctttgagctggtttttctggttggttgatcagaatcatgaagttga |
101 |
Q |
| |
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|||||||||| ||||| ||||||||| |||||||||||||||||||||| || |||||||| |||||||| ||||| ||||||||||||||||||| || |
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| T |
28666938 |
tgagggatatatgtgtgaattttatactagctgggagagacacttcttctgtggctttgagttggtttttttggttacttgatcagaatcatgaagtgga |
28666839 |
T |
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| Q |
102 |
ggagaaaatattagaagaaatttgcagggtggtg |
135 |
Q |
| |
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|||||| ||||||||||| || |||| ||||||| |
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| T |
28666838 |
ggagaagatattagaagagatatgcaaggtggtg |
28666805 |
T |
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