View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9905_low_13 (Length: 228)
Name: NF9905_low_13
Description: NF9905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9905_low_13 |
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| [»] scaffold0400 (1 HSPs) |
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| [»] scaffold0365 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 84 - 213
Target Start/End: Original strand, 14531268 - 14531399
Alignment:
| Q |
84 |
ggttttacaaatatgaaactgtgaagttacaaatatgaaactg--aagtagcatcaaaacaatctttagatgtaattaaacctttgaagttgattatgac |
181 |
Q |
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| T |
14531268 |
ggttttacaaatatgaaactttaaagttacgaatatgaaactgtgaagtagtatcaaaacaatctttagatgtaattaaaactttgaagatgattatgac |
14531367 |
T |
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| Q |
182 |
attacaaactgtttgcagacctgctccatggt |
213 |
Q |
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| T |
14531368 |
attacaaactgtttgcagacatgctccatggt |
14531399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 151 - 213
Target Start/End: Complemental strand, 15042082 - 15042020
Alignment:
| Q |
151 |
atgtaattaaacctttgaagttgattatgacattacaaactgtttgcagacctgctccatggt |
213 |
Q |
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| T |
15042082 |
atgtaattaaccctttgaagataattatgacattacaaactgcttgcagacctgctccatggt |
15042020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 166 - 213
Target Start/End: Complemental strand, 15033924 - 15033877
Alignment:
| Q |
166 |
tgaagttgattatgacattacaaactgtttgcagacctgctccatggt |
213 |
Q |
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| T |
15033924 |
tgaagatgattatgacattacaaactgtctgcagacctgctccatggt |
15033877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 15012495 - 15012446
Alignment:
| Q |
164 |
tttgaagttgattatgacattacaaactgtttgcagacctgctccatggt |
213 |
Q |
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| T |
15012495 |
tttgaagatgattatgacattacaaactgcctgcagacctgctccatggt |
15012446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 15038505 - 15038456
Alignment:
| Q |
164 |
tttgaagttgattatgacattacaaactgtttgcagacctgctccatggt |
213 |
Q |
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| T |
15038505 |
tttgaagatgattatgacattacaaactgcctgcagacctgctccatggt |
15038456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 14521248 - 14521299
Alignment:
| Q |
162 |
cctttgaagttgattatgacattacaaactgtttgcagacctgctccatggt |
213 |
Q |
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| T |
14521248 |
cctttgaatatgattaagacattacaagctgcttgcagacctgctccatggt |
14521299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 15003607 - 15003561
Alignment:
| Q |
164 |
tttgaagttgattatgacattacaaactgtttgcagacctgctccat |
210 |
Q |
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| T |
15003607 |
tttgaagatgattatgacattaaaaactgcctgcagacctgctccat |
15003561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 14264 - 14227
Alignment:
| Q |
176 |
tatgacattacaaactgtttgcagacctgctccatggt |
213 |
Q |
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| T |
14264 |
tatgacattacaagctgcttgcagacctgctccatggt |
14227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 14907 - 14870
Alignment:
| Q |
176 |
tatgacattacaaactgtttgcagacctgctccatggt |
213 |
Q |
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| T |
14907 |
tatgacattacaagctgcttgcagacctgctccatggt |
14870 |
T |
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