View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9905_low_2 (Length: 529)
Name: NF9905_low_2
Description: NF9905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9905_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 16 - 508
Target Start/End: Original strand, 36333198 - 36333688
Alignment:
| Q |
16 |
agcacagatcccaacagatttcagaaaatcaaaacaacagagagttttcctgattcctgaacgattttctgacatgaaaacatgatnnnnnnnnnnnnnn |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36333198 |
agcacagatcccaacagatttcagaaaatcaaaacaacagagagttttcctgattcctgaacgattttctgacatgaaaacatgatagagagagagagag |
36333297 |
T |
|
| Q |
116 |
nnnnnaggatactagtagtattatgttgtactaacnnnnnnncaaagtgagaatcttttgagtacttatcaaagnnnnnnnncacattaaaaagtgactc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
36333298 |
aga--aggatactagtagtattatgttgtactaacaaaaaaacaaagtgagaatcttttgagtacttatcaaagttttttttcgcattaaaaagtgactc |
36333395 |
T |
|
| Q |
216 |
attctcacacactcttcacttgatatagtgaaaacttgtgtttctctaacacaagtctaaagaaacagttcacaaaaaatggctgaaaatgatccatttt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36333396 |
attctcacacactcttcacttgatatagtgaaaacttgtgtttctctaacacaagtctaaagaaacagttcacaaaaaatggctgaaaatgatccatttt |
36333495 |
T |
|
| Q |
316 |
gctatccatatcacattgaagatgattgcattcctactgaaaaatggtcaaatggacttcaacattctcaaaattcagtgagcacgctttaatattatca |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
36333496 |
gctatccatatcacattgaagatgattgcattcctactgaaaaatggtcaaatggacttcaacattctcaaaattcagtgagcacactttaatattatca |
36333595 |
T |
|
| Q |
416 |
tgccatctttttgttcttcattgaattaaaagtgtagcatttttatatgcttaacaaattttctatttttccctcactcatttgcttaaccat |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36333596 |
tgccatctttttgttcttcattgaattaaaagtgtagcatttttatatgcttaacaaattttctatttttccctcactcatttgcttaaccat |
36333688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 189
Target Start/End: Complemental strand, 2629701 - 2629670
Alignment:
| Q |
158 |
caaagtgagaatcttttgagtacttatcaaag |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
2629701 |
caaagtgagaatcttttgagtacttatcaaag |
2629670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 189
Target Start/End: Complemental strand, 22979622 - 22979591
Alignment:
| Q |
158 |
caaagtgagaatcttttgagtacttatcaaag |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
22979622 |
caaagtgagaatcttttgagtacttatcaaag |
22979591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 189
Target Start/End: Original strand, 23808782 - 23808813
Alignment:
| Q |
158 |
caaagtgagaatcttttgagtacttatcaaag |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
23808782 |
caaagtgagaatcttttgagtacttatcaaag |
23808813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University