View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9905_low_5 (Length: 351)
Name: NF9905_low_5
Description: NF9905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9905_low_5 |
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| [»] scaffold1178 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 2016562 - 2016880
Alignment:
| Q |
18 |
gtttaaaaaagtgataaatctagttcatgaatccagatattcattgaaggtcaaagcatattgagttgtaccacaactacattg-aaatcgacttagaat |
116 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
2016562 |
gtttaaaaaagtgataaatctggttcatgaatccagatattcatggaaggtcaaagcatattgagttgtgccacaactacattggaaatcgacttagaat |
2016661 |
T |
|
| Q |
117 |
acatcaaaaccacacaacagtgagcaaatgttctcaccaatgcaatgtccattgagaagcttgaacagttcaaaaatattatgaaaattacaatttacga |
216 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2016662 |
acatcaagaccacacaacagtgagcaaatgttctcaccaatgcaatgtccattgagaagcttgaacagttcaaaattattatgaaaattacaatttacga |
2016761 |
T |
|
| Q |
217 |
aggggtgttaaatgatgattgcaacttttcatattcctaagtttcttaattaatgtatctacaagttctaaactctctcctctt---tattcctagacgc |
313 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||| ||||||||||| | |
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| T |
2016762 |
aggggtgttaaatgataattgcaacttttcatattcctaagtttc----ttaatgcatctacaagttctaaaccctctcctctttaatattcctagacac |
2016857 |
T |
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| Q |
314 |
atttactcatttactagaatttt |
336 |
Q |
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|||||||||||| |||||||||| |
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| T |
2016858 |
atttactcatttgctagaatttt |
2016880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 111 - 259
Target Start/End: Original strand, 2009404 - 2009560
Alignment:
| Q |
111 |
tagaatacatcaaaaccacacaacagtgagcaaat-----gttctcaccaatgcaatgtccattgagaagcttgaacagttcaaaaatattatgaaaat- |
204 |
Q |
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|||||| |||||| |||||||||||| |||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
2009404 |
tagaatgcatcaagaccacacaacagcgagcaaattaaatgttctcaccaatgcaatatttattgagaagcttgaacagttcaaaaatattatgaaaatt |
2009503 |
T |
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| Q |
205 |
--tacaatttacgaaggggtgttaaatgatgattgcaacttttcatattcctaagtt |
259 |
Q |
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| T |
2009504 |
agtacaatttaagaaggggtgttaaatgataattgaaatttttcatattcctaagtt |
2009560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 2009282 - 2009344
Alignment:
| Q |
19 |
tttaaaaaagtgataaatctagttcatgaatccagatattcattgaaggtcaaagcatattga |
81 |
Q |
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| T |
2009282 |
tttaaaaaagtgataaatttggttcatgaattcagttgttcatggaaggtcaaaacatattga |
2009344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 101 - 266
Target Start/End: Complemental strand, 32850734 - 32850568
Alignment:
| Q |
101 |
gaaatcgacttagaatacatcaaaaccacacaacagtgagcaaatgttctcaccaatgcaatgtccattgagaagcttgaacagttcaaaaatattatga |
200 |
Q |
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|||||| |||||||||||||||| ||||| ||||| |||| ||||||||||||| ||| || |||||||||||||||||||||||||| ||| ||||| |
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| T |
32850734 |
gaaatcaacttagaatacatcaagaccacggaacagccagcagatgttctcaccaaagcagtgcccattgagaagcttgaacagttcaaagataatatga |
32850635 |
T |
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| Q |
201 |
aaattacaatttacgaaggggtgttaaatgatga-ttgcaacttttcatattcctaagtttcttaat |
266 |
Q |
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||||||||| ||| || |||||||||||||| | ||| || ||| |||||||||| ||| |||||| |
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| T |
32850634 |
aaattacaaattaagagagggtgttaaatgataatttgtaattttccatattcctaggttccttaat |
32850568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 101 - 266
Target Start/End: Complemental strand, 37173877 - 37173711
Alignment:
| Q |
101 |
gaaatcgacttagaatacatcaaaaccacacaacagtgagcaaatgttctcaccaatgcaatgtccattgagaagcttgaacagttcaaaaatattatga |
200 |
Q |
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|||||| |||||||||||||||| ||||| ||||| |||| ||||||||||||| ||| || ||||||||| |||||||||||||||| ||| ||||| |
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| T |
37173877 |
gaaatcaacttagaatacatcaagaccacggaacagccagcagatgttctcaccaaagcagtgcccattgagatgcttgaacagttcaaagataatatga |
37173778 |
T |
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| Q |
201 |
aaattacaatttacgaaggggtgttaaatgatga-ttgcaacttttcatattcctaagtttcttaat |
266 |
Q |
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||||||||| ||| || |||||||||||||| | ||| || |||||||||||||| ||| |||||| |
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| T |
37173777 |
aaattacaaattaagagagggtgttaaatgataatttgtaatttttcatattcctaggttccttaat |
37173711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 37173953 - 37173899
Alignment:
| Q |
46 |
gaatccagatattcattgaaggtcaaagcatattgagttgtaccacaactacatt |
100 |
Q |
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| T |
37173953 |
gaatccagtttttcatggaaggtcaaagcatattgagctgcgccacaactacatt |
37173899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1178 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold1178
Description:
Target: scaffold1178; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 101 - 266
Target Start/End: Complemental strand, 2452 - 2286
Alignment:
| Q |
101 |
gaaatcgacttagaatacatcaaaaccacacaacagtgagcaaatgttctcaccaatgcaatgtccattgagaagcttgaacagttcaaaaatattatga |
200 |
Q |
| |
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|||||| |||||||||||||||| ||||| | ||| |||| ||||||||||||| ||| || ||||||||||||||||| |||||||| ||| ||||| |
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| T |
2452 |
gaaatcaacttagaatacatcaagaccacggagcagccagcagatgttctcaccaaagcagtgcccattgagaagcttgaaaagttcaaagataatatga |
2353 |
T |
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| Q |
201 |
aaattacaatttacgaaggggtgttaaatgatga-ttgcaacttttcatattcctaagtttcttaat |
266 |
Q |
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|| |||||| ||| ||| |||||||||||||| | ||| || ||| |||||||||| ||| |||||| |
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| T |
2352 |
aagttacaaattaagaaagggtgttaaatgataatttgtaattttccatattcctaggttccttaat |
2286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 18408496 - 18408561
Alignment:
| Q |
144 |
atgttctcaccaatgcaatgtccattgagaagcttgaacagttcaaaaatattatgaaaattacaa |
209 |
Q |
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| T |
18408496 |
atgttctaagcaaagcaatatccattgagaagcttgaacagttcaaagacattgtgaaaattacaa |
18408561 |
T |
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