View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9906_high_1 (Length: 439)

Name: NF9906_high_1
Description: NF9906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9906_high_1
NF9906_high_1
[»] chr4 (19 HSPs)
chr4 (9-261)||(1148166-1148415)
chr4 (271-421)||(1147963-1148113)
chr4 (85-177)||(1171866-1171955)
chr4 (104-145)||(1164409-1164450)
chr4 (3-51)||(18513176-18513224)
chr4 (5-51)||(37203324-37203370)
chr4 (298-413)||(1133094-1133216)
chr4 (1-42)||(19312414-19312455)
chr4 (1-52)||(3947701-3947752)
chr4 (85-127)||(1181158-1181200)
chr4 (1-47)||(3712458-3712504)
chr4 (1-51)||(14465006-14465056)
chr4 (1-51)||(22234820-22234870)
chr4 (1-51)||(23292927-23292977)
chr4 (1-51)||(24613631-24613681)
chr4 (1-50)||(22440559-22440608)
chr4 (2-51)||(24343582-24343631)
chr4 (3-52)||(40965341-40965390)
chr4 (320-356)||(1136755-1136791)
[»] chr5 (3 HSPs)
chr5 (1-51)||(32766873-32766923)
chr5 (1-51)||(42893428-42893478)
chr5 (3-51)||(43564951-43564999)
[»] chr7 (6 HSPs)
chr7 (3-51)||(1433529-1433577)
chr7 (4-51)||(21880223-21880270)
chr7 (1-51)||(598276-598326)
chr7 (1-51)||(5409772-5409822)
chr7 (1-51)||(29763130-29763180)
chr7 (2-42)||(18215147-18215187)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-51)||(241673-241723)
[»] chr1 (6 HSPs)
chr1 (1-51)||(9828123-9828173)
chr1 (2-51)||(2218297-2218346)
chr1 (3-50)||(16297223-16297270)
chr1 (1-51)||(6427543-6427593)
chr1 (3-51)||(10233326-10233374)
chr1 (4-52)||(40258873-40258921)
[»] chr6 (5 HSPs)
chr6 (6-51)||(7378052-7378097)
chr6 (2-49)||(9025448-9025495)
chr6 (3-41)||(33340895-33340933)
chr6 (1-42)||(18803501-18803542)
chr6 (3-51)||(7248439-7248487)
[»] chr8 (7 HSPs)
chr8 (3-51)||(22652057-22652105)
chr8 (6-51)||(15816059-15816104)
chr8 (2-51)||(24413500-24413549)
chr8 (2-51)||(36450695-36450744)
chr8 (3-51)||(27213595-27213643)
chr8 (3-51)||(29447525-29447573)
chr8 (2-50)||(44067596-44067644)
[»] chr3 (7 HSPs)
chr3 (1-51)||(41961580-41961630)
chr3 (2-51)||(11610578-11610627)
chr3 (7-52)||(25211604-25211649)
chr3 (5-50)||(29508522-29508567)
chr3 (2-50)||(24204983-24205031)
chr3 (2-50)||(25775576-25775624)
chr3 (3-51)||(34185053-34185101)
[»] chr2 (2 HSPs)
chr2 (1-51)||(21782745-21782795)
chr2 (2-51)||(37419823-37419872)
[»] scaffold0020 (1 HSPs)
scaffold0020 (2-51)||(135264-135313)
[»] scaffold0652 (1 HSPs)
scaffold0652 (2-54)||(400-452)


Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 9 - 261
Target Start/End: Complemental strand, 1148415 - 1148166
Alignment:
Q  9 gacaccaggacacgtctaatctgagaagtgtccgagcttcataactttagacacattgtttcacttccaccgtggtctacattaatcctcactttgtctt 108  Q
    |||||||| |||||| ||||| |||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1148415 gacaccagaacacgtataatccgagaagtgtctgagcttcatagctttagacacattgtttcacttccactgtggtctacattaatcctcactttgtctt 1148316  T
Q  109 tattgctactaaatactatatattttggccacaattagtatcatgttttcttgttgattagtttgtgtcgtctgtattctgtaaatctcaatccataaat 208  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1148315 tattgctactaaatactatatattttggccacaattagtctcatgttttcttgttgattagtttgtgtcgtctgtattctgtaaatctc-atccataaat 1148217  T
Q  209 atcatttggaaatgtagtatgaatatatatacatgtctgaatctttgcatgtt 261  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  1148216 atcatttggaaatgtagtatga--atatatacatgtctgaatctttgcatgtt 1148166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 271 - 421
Target Start/End: Complemental strand, 1148113 - 1147963
Alignment:
Q  271 aactaaggcttacttgatgcaaacatgtaaatgttgaactagtgaattgtgaggttgaaattctagagagaacctttggctatttataaagaagcagaaa 370  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1148113 aactaaggcttacatgatgcaaacatgtaaatgttgaactagtgaattgtgaggttgaaattctagagagaacctttgggtatttataaagaagcagaaa 1148014  T
Q  371 caagctaattttactttcttttgataaagataaactatttcataggaactc 421  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1148013 caagctaattttactttcttttgataaagataaactatttcataggaactc 1147963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 85 - 177
Target Start/End: Complemental strand, 1171955 - 1171866
Alignment:
Q  85 ctacattaatcctcactttgtctttattgctactaaatactatatattttggccacaattagtatcatgttttcttgttgattagtttgtgtc 177  Q
    |||||||||||| | ||| ||||||||||||||||||||   ||||||||| || |||||| ||||||||| ||||||||||| |||||||||    
T  1171955 ctacattaatccactcttagtctttattgctactaaata---tatattttgaccgcaattaatatcatgttctcttgttgatttgtttgtgtc 1171866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 1164450 - 1164409
Alignment:
Q  104 gtctttattgctactaaatactatatattttggccacaatta 145  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  1164450 gtctttattgctactaaatactatgtattttggccacaatta 1164409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 18513224 - 18513176
Alignment:
Q  3 gtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 51  Q
    |||||||||||||||||||| |||||||||| |||||||| ||||||||    
T  18513224 gtgtccgacaccaggacacgcctaatctgaggagtgtccgtgcttcata 18513176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 37203324 - 37203370
Alignment:
Q  5 gtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 51  Q
    |||||||||| |||||||||||||| |||||||||||| ||||||||    
T  37203324 gtccgacaccgggacacgtctaatccgagaagtgtccgtgcttcata 37203370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 413
Target Start/End: Complemental strand, 1133216 - 1133094
Alignment:
Q  298 taaatgttgaactagtgaattgtgaggttgaaattctagagagaacctttggctattta-------taaagaagcagaaacaagctaa-ttttactttct 389  Q
    |||||||| |||| |||| |||| |||||||| ||||||||||||  ||| | ||||||       |||||||||||||||| ||||| |||| ||||||    
T  1133216 taaatgttaaacttgtgacttgtaaggttgaagttctagagagaaattttagttatttactgacaataaagaagcagaaacaggctaattttttctttct 1133117  T
Q  390 tttgataaagataaactatttcat 413  Q
    ||||  ||||||||||||||||||    
T  1133116 tttg-gaaagataaactatttcat 1133094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 19312414 - 19312455
Alignment:
Q  1 acgtgtccgacaccaggacacgtctaatctgagaagtgtccg 42  Q
    ||||||||||||||  ||||||||||||||||||||||||||    
T  19312414 acgtgtccgacaccgagacacgtctaatctgagaagtgtccg 19312455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 3947752 - 3947701
Alignment:
Q  1 acgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcataa 52  Q
    |||||||||||||||||||||  |||||| ||| |||||||| |||||||||    
T  3947752 acgtgtccgacaccaggacacacctaatccgaggagtgtccgtgcttcataa 3947701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 127
Target Start/End: Complemental strand, 1181200 - 1181158
Alignment:
Q  85 ctacattaatcctcactttgtctttattgctactaaatactat 127  Q
    |||||||||||| | ||| ||||||||||||||||||||||||    
T  1181200 ctacattaatccactcttagtctttattgctactaaatactat 1181158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 3712504 - 3712458
Alignment:
Q  1 acgtgtccgacaccaggacacgtctaatctgagaagtgtccgagctt 47  Q
    |||||||||||||| ||||||| |||||||||| |||||||| ||||    
T  3712504 acgtgtccgacaccgggacacggctaatctgaggagtgtccgtgctt 3712458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 14465056 - 14465006
Alignment:
Q  1 acgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 51  Q
    |||||| ||||||  |||||||||||||||||| |||||||| ||||||||    
T  14465056 acgtgttcgacactgggacacgtctaatctgaggagtgtccgtgcttcata 14465006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 22234870 - 22234820
Alignment:
Q  1 acgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 51  Q
    |||||||||||||||||||||  |||||| ||||||||| || ||||||||    
T  22234870 acgtgtccgacaccaggacacagctaatccgagaagtgttcgtgcttcata 22234820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 23292977 - 23292927
Alignment:
Q  1 acgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 51  Q
    |||||||||||||| ||||||| |||||| ||| |||||||| ||||||||    
T  23292977 acgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcata 23292927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 24613681 - 24613631
Alignment:
Q  1 acgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 51  Q
    ||||||| |||||||||||||||||||||  || |||||||| ||||||||    
T  24613681 acgtgtctgacaccaggacacgtctaatcctaggagtgtccgtgcttcata 24613631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 22440608 - 22440559
Alignment:
Q  1 acgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcat 50  Q
    ||||||||||||| |||||||| |||||| ||| |||||||| |||||||    
T  22440608 acgtgtccgacactaggacacgcctaatccgaggagtgtccgtgcttcat 22440559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 24343582 - 24343631
Alignment:
Q  2 cgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 51  Q
    ||||||||||||| ||||||| ||| |||||| |||||||| ||||||||    
T  24343582 cgtgtccgacaccgggacacgcctattctgaggagtgtccgtgcttcata 24343631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 40965341 - 40965390
Alignment:
Q  3 gtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcataa 52  Q
    ||||||||||||| |||||| |||||||||| |||||| | |||||||||    
T  40965341 gtgtccgacaccaagacacgcctaatctgaggagtgtcggtgcttcataa 40965390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 356
Target Start/End: Complemental strand, 1136791 - 1136755
Alignment:
Q  320 tgaggttgaaattctagagagaacctttggctattta 356  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  1136791 tgaggttgaaattctagagagaacatttggttattta 1136755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 32766923 - 32766873
Alignment:
Q  1 acgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 51  Q
    |||||||||||||||||| |||||||||||||| |||||||| ||||||||    
T  32766923 acgtgtccgacaccaggatacgtctaatctgaggagtgtccgtgcttcata 32766873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 42893428 - 42893478
Alignment:
Q  1 acgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 51  Q
    |||||||||||||||||||||| ||||| |||| |||||||  ||||||||    
T  42893428 acgtgtccgacaccaggacacgcctaatatgaggagtgtccatgcttcata 42893478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 43564951 - 43564999
Alignment:
Q  3 gtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 51  Q
    ||||||||| || ||||||| |||||| |||||||||||| ||||||||    
T  43564951 gtgtccgacgccgggacacgcctaatccgagaagtgtccgtgcttcata 43564999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 1433529 - 1433577
Alignment:
Q  3 gtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 51  Q
    ||||||||||||||||||||||||||| ||| |||||||| ||||||||    
T  1433529 gtgtccgacaccaggacacgtctaatccgaggagtgtccgtgcttcata 1433577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 21880223 - 21880270
Alignment:
Q  4 tgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 51  Q
    ||||||||||||||||||| |||||| |||||||||||| ||||||||    
T  21880223 tgtccgacaccaggacacgcctaatccgagaagtgtccgtgcttcata 21880270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 598276 - 598326
Alignment:
Q  1 acgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 51  Q
    |||||||||||||| ||||||| |||||| |||||||||||| ||||||||    
T  598276 acgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcata 598326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 5409822 - 5409772
Alignment:
Q  1 acgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 51  Q
    |||||||||||||| ||||||| |||||| ||| |||||||| ||||||||    
T  5409822 acgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcata 5409772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 29763180 - 29763130
Alignment:
Q  1 acgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 51  Q
    |||||||||||| ||||||||| |||||| ||| |||||||| ||||||||    
T  29763180 acgtgtccgacatcaggacacgcctaatccgaggagtgtccgtgcttcata 29763130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 18215187 - 18215147
Alignment:
Q  2 cgtgtccgacaccaggacacgtctaatctgagaagtgtccg 42  Q
    ||||||||||||| ||||||| |||||||||| ||||||||    
T  18215187 cgtgtccgacaccgggacacgcctaatctgaggagtgtccg 18215147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 241673 - 241723
Alignment:
Q  1 acgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 51  Q
    |||||||||||||| ||||||| |||||| |||||||||||| ||||||||    
T  241673 acgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcata 241723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 9828123 - 9828173
Alignment:
Q  1 acgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 51  Q
    |||||||||||||| |||||||||||||| ||| |||||||| ||||||||    
T  9828123 acgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcata 9828173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 2218297 - 2218346
Alignment:
Q  2 cgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 51  Q
    |||||||||||| |||||||| |||||||||| |||||||| ||||||||    
T  2218297 cgtgtccgacactaggacacgcctaatctgaggagtgtccgtgcttcata 2218346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 16297270 - 16297223
Alignment:
Q  3 gtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcat 50  Q
    |||||||||||||||||||| |||||| ||| |||||||| |||||||    
T  16297270 gtgtccgacaccaggacacgcctaatccgaggagtgtccgtgcttcat 16297223  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 6427543 - 6427593
Alignment:
Q  1 acgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 51  Q
    |||||||||||||| ||||||| |||||||||  |||||||| ||||||||    
T  6427543 acgtgtccgacaccgggacacgcctaatctgatgagtgtccgtgcttcata 6427593  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 10233326 - 10233374
Alignment:
Q  3 gtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 51  Q
    |||||||||||||||||||  |||||| ||| |||||||| ||||||||    
T  10233326 gtgtccgacaccaggacacacctaatcagaggagtgtccgtgcttcata 10233374  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 40258921 - 40258873
Alignment:
Q  4 tgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcataa 52  Q
    ||||||||||||||||||| |||||| ||| |||||||  |||||||||    
T  40258921 tgtccgacaccaggacacgcctaatccgaggagtgtccatgcttcataa 40258873  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 7378052 - 7378097
Alignment:
Q  6 tccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 51  Q
    ||||||||| ||||||| ||||||||||||||||||| ||||||||    
T  7378052 tccgacaccgggacacggctaatctgagaagtgtccgtgcttcata 7378097  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 9025495 - 9025448
Alignment:
Q  2 cgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttca 49  Q
    ||||||||||||| ||||||| |||||| |||||||||||| ||||||    
T  9025495 cgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttca 9025448  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 33340933 - 33340895
Alignment:
Q  3 gtgtccgacaccaggacacgtctaatctgagaagtgtcc 41  Q
    |||||||||||  ||||||||||||||||||||||||||    
T  33340933 gtgtccgacactgggacacgtctaatctgagaagtgtcc 33340895  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 18803542 - 18803501
Alignment:
Q  1 acgtgtccgacaccaggacacgtctaatctgagaagtgtccg 42  Q
    |||| ||||||| |||||||||||||||| ||||||||||||    
T  18803542 acgtatccgacatcaggacacgtctaatccgagaagtgtccg 18803501  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 7248439 - 7248487
Alignment:
Q  3 gtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 51  Q
    |||||||||||| ||||||||| |||| ||| |||||||| ||||||||    
T  7248439 gtgtccgacaccgggacacgtcaaatccgaggagtgtccgtgcttcata 7248487  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 22652057 - 22652105
Alignment:
Q  3 gtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 51  Q
    |||||||||||| |||||||||||||| ||| |||||||| ||||||||    
T  22652057 gtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcata 22652105  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 15816104 - 15816059
Alignment:
Q  6 tccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 51  Q
    ||||||||| ||||||| |||||| |||||||||||| ||||||||    
T  15816104 tccgacaccgggacacgcctaatccgagaagtgtccgtgcttcata 15816059  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 24413549 - 24413500
Alignment:
Q  2 cgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 51  Q
    ||||||| ||| | |||||||||||||| |||||||||||| ||||||||    
T  24413549 cgtgtccaacagcgggacacgtctaatccgagaagtgtccgtgcttcata 24413500  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 36450744 - 36450695
Alignment:
Q  2 cgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 51  Q
    ||||||||||||||||||||| |||||| ||| |||||| | ||||||||    
T  36450744 cgtgtccgacaccaggacacgcctaatccgaggagtgtctgtgcttcata 36450695  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 27213595 - 27213643
Alignment:
Q  3 gtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 51  Q
    ||||| |||||| ||||||| |||||| |||||||||||| ||||||||    
T  27213595 gtgtcggacaccgggacacggctaatccgagaagtgtccgtgcttcata 27213643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 29447525 - 29447573
Alignment:
Q  3 gtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 51  Q
    |||||||||||| ||||| |||||||| ||| |||||||| ||||||||    
T  29447525 gtgtccgacaccgggacaggtctaatcggaggagtgtccgtgcttcata 29447573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 44067596 - 44067644
Alignment:
Q  2 cgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcat 50  Q
    ||||||||||||||||||||| |||||  ||| |||||||| |||||||    
T  44067596 cgtgtccgacaccaggacacgcctaattcgaggagtgtccgtgcttcat 44067644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 41961630 - 41961580
Alignment:
Q  1 acgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 51  Q
    |||||||||||||  ||||||| |||||| |||||||||||| ||||||||    
T  41961630 acgtgtccgacactgggacacgcctaatccgagaagtgtccgtgcttcata 41961580  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 11610578 - 11610627
Alignment:
Q  2 cgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 51  Q
    ||||||||||| | ||||||| |||||||||| |||||||| ||||||||    
T  11610578 cgtgtccgacatcgggacacgcctaatctgaggagtgtccgtgcttcata 11610627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 25211604 - 25211649
Alignment:
Q  7 ccgacaccaggacacgtctaatctgagaagtgtccgagcttcataa 52  Q
    |||||||||||||||| ||||||||||||||||  | |||||||||    
T  25211604 ccgacaccaggacacgcctaatctgagaagtgtttgtgcttcataa 25211649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 29508522 - 29508567
Alignment:
Q  5 gtccgacaccaggacacgtctaatctgagaagtgtccgagcttcat 50  Q
    |||||||||| ||||||||||||||  ||||||||||| |||||||    
T  29508522 gtccgacaccgggacacgtctaatccaagaagtgtccgtgcttcat 29508567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 24205031 - 24204983
Alignment:
Q  2 cgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcat 50  Q
    ||||||||||||||||||||| |||||  ||| |||||||| |||||||    
T  24205031 cgtgtccgacaccaggacacgcctaattcgaggagtgtccgtgcttcat 24204983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 25775576 - 25775624
Alignment:
Q  2 cgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcat 50  Q
    ||||||||||||||||||||| |||||| ||| ||||| || |||||||    
T  25775576 cgtgtccgacaccaggacacgcctaatccgaggagtgttcgtgcttcat 25775624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 34185101 - 34185053
Alignment:
Q  3 gtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 51  Q
    |||||||||||| ||||||| |||||| ||| |||||||| ||||||||    
T  34185101 gtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcata 34185053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 21782795 - 21782745
Alignment:
Q  1 acgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 51  Q
    |||||||| ||||| |||||||||||||||| | |||||||| ||||||||    
T  21782795 acgtgtccaacaccgggacacgtctaatctgtggagtgtccgtgcttcata 21782745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 37419823 - 37419872
Alignment:
Q  2 cgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 51  Q
    ||||||||||||| ||||||| |||||| ||| |||||||| ||||||||    
T  37419823 cgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcata 37419872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 135313 - 135264
Alignment:
Q  2 cgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 51  Q
    ||||||||||||||||||||| ||||||||||  |||| || ||||||||    
T  135313 cgtgtccgacaccaggacacgcctaatctgaggcgtgttcgtgcttcata 135264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 452 - 400
Alignment:
Q  2 cgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcataact 54  Q
    ||||||||||||| ||||||  |||||| ||| |||||||| |||||||||||    
T  452 cgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcataact 400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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