View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9906_high_4 (Length: 278)
Name: NF9906_high_4
Description: NF9906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9906_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 12692972 - 12693221
Alignment:
| Q |
19 |
gataccagcaattggattgaaagattttcatatcgtagttggaatcgttgtttttaaagattttggaaacgaagcttcaattgttatttgtctttcatac |
118 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
12692972 |
gataccagcaattggattgaaagattgccatatcgtagttggaatcgttgtttttaaagattttgaaaacgatgcttcaattgttatttgtctttcatac |
12693071 |
T |
|
| Q |
119 |
agtgaaaatgttcttttgtacgagcttctgagagcaattgaaatatcaaagaattcatttagttgtattttatactaattttgatttcgatgctatagaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12693072 |
agtgaaaatgttcttttgtacgagcttctgagagcaattgaaatatcaaagaattcatttagttgtattttatactaattttgatttcgatgttatagaa |
12693171 |
T |
|
| Q |
219 |
aggtctgctccacacaacctagtggtttaaagctagatgataaacctttg |
268 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
12693172 |
aggtctgctccacacaaactagtggtttaaagctagatgataaacctttg |
12693221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 190 - 266
Target Start/End: Complemental strand, 12689431 - 12689355
Alignment:
| Q |
190 |
atactaattttgatttcgatgctatagaaaggtctgctccacacaacctagtggtttaaagctagatgataaacctt |
266 |
Q |
| |
|
||||||||||||| ||| ||| ||||| ||||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
12689431 |
atactaattttgaattcaatgttataggaaggtgtgctccacacaacctagtggttaaaagctagatgataaacctt |
12689355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 169 - 266
Target Start/End: Complemental strand, 12696164 - 12696067
Alignment:
| Q |
169 |
gaattcatttagttgtattttatactaattttgatttcgatgctatagaaaggtctgctccacacaacctagtggtttaaagctagatgataaacctt |
266 |
Q |
| |
|
||||||||||||||| | | ||||||||||||| || ||| ||||| || || |||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
12696164 |
gaattcatttagttggagtcaatactaattttgaaatcaatgttatagtaacgtgtgctccacacaacctagtggttgaaagctagacgataaacctt |
12696067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University