View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9906_low_1 (Length: 651)
Name: NF9906_low_1
Description: NF9906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9906_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 566; Significance: 0; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 8 - 637
Target Start/End: Complemental strand, 22778870 - 22778243
Alignment:
| Q |
8 |
agaagcaaaggaaattgggtaccggttaaaccaatatcagatgctctagttatcaatgttggagatgttatagaggtaacacatttttgtctgataccga |
107 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
22778870 |
agaaacaaaggaaattgggtaccggttaaaccaatatcagatgctctagttatcaatgttggagatgttatagaggtaacacatttttgtctgataccaa |
22778771 |
T |
|
| Q |
108 |
tatatatgtatgcatgtgtgtgtgtttttgcattccgtcactattatatannnnnnnnaattatgatcggtttgtaaatgttcatgtcgatgtcatgtct |
207 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
22778770 |
tatataggtatgcatgtgtgtgtgtttttgcattccgtcactattatat--tttttttaattatgatcggtttgtaaatgttcatgtcgatgtcatgtct |
22778673 |
T |
|
| Q |
208 |
agttattgtaccttaattaatgcttcatagatgtcatgctcaattcgcacgattcacttatttcgtcattgaacagatattgagtaatggaaaatacaag |
307 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22778672 |
agttattgtaccttaattaatgctttatagatgtcatgctcaattcgcacgattcacttatttcgtcattgaacagatattgagtaatggaaaatacaag |
22778573 |
T |
|
| Q |
308 |
agtgtagaacacagggtaatgacaaatcagaacaaaagaaggatttcttatgcatcatttttattccctcgagatgacgttgaagttgagccctttgatc |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22778572 |
agtgtagaacacagggtaatgacaaatcagaacaaaagaaggatttcttatgcatcatttttattccctcgagatgacgttgaagttgagccctttgatc |
22778473 |
T |
|
| Q |
408 |
atatgatagatgctcaaaaccccaagatgtaccagaaagtcaagtatggagattatctgaggcattccttaaagagaaaaatggagcgaaaaacacacac |
507 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22778472 |
atatgatagatgctcaaaaccccaagatgtaccagaaagtcaagtatggagattatttgaggcattccttaaagagaaaaatggagcgaaaaacacacac |
22778373 |
T |
|
| Q |
508 |
cgatgtggcaaagataaaggaacatgtaatagtgacataacaactcaaagaaaatgaggaaaaggatgaagattccgtgattgtctgtttgttaatagtg |
607 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
22778372 |
cgatgtggcaaagataaaggaacatgtaatagtgacataacaactcaaagaaaatgaggaaaaagatgaagattccgtgattgtctgtttgttattagtg |
22778273 |
T |
|
| Q |
608 |
catattttctgttttttaaggaattttctg |
637 |
Q |
| |
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||||||||||||||||||||| |||||||| |
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| T |
22778272 |
catattttctgttttttaagggattttctg |
22778243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 281 - 563
Target Start/End: Complemental strand, 22782723 - 22782441
Alignment:
| Q |
281 |
cagatattgagtaatggaaaatacaagagtgtagaacacagggtaatgacaaatcagaacaaaagaaggatttcttatgcatcatttttattccctcgag |
380 |
Q |
| |
|
|||||||||||||| ||||||| ||| |||||||||||||| | | |||||||| ||||||| ||||||| |||| ||||||||||||| || |||| || |
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| T |
22782723 |
cagatattgagtaacggaaaattcaaaagtgtagaacacagagcagtgacaaataagaacaagagaaggacttctaatgcatcatttttgttgcctcaag |
22782624 |
T |
|
| Q |
381 |
atgacgttgaagttgagccctttgatcatatgatagatgctcaaaaccccaagatgtaccagaaagtcaagtatggagattatctgaggcattccttaaa |
480 |
Q |
| |
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|||| |||||||||||||| ||| |||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||| ||||||||||||| || |
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| T |
22782623 |
atgatgttgaagttgagccatttcatcatatgatagatgctcaacatcccaagatgtaccagaaagtcaagtttggagattatttgaggcattccttgaa |
22782524 |
T |
|
| Q |
481 |
gagaaaaatggagcgaaaaacacacaccgatgtggcaaagataaaggaacatgtaatagtgacataacaactcaaagaaaatg |
563 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||| |||| |||||||||||| ||||||| || |||| || | |||||||||| |
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| T |
22782523 |
gagaaaaatggagggaaaaacacacactgatgttgcaaggataaaggaacaagtaatagagaaataaaaaataaaagaaaatg |
22782441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 277 - 527
Target Start/End: Complemental strand, 22775224 - 22774974
Alignment:
| Q |
277 |
tgaacagatattgagtaatggaaaatacaagagtgtagaacacagggtaatgacaaatcagaacaaaagaaggatttcttatgcatcatttttattccct |
376 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||||||| | |||||||||| | ||||| ||||||| |||| ||||| ||||| | || ||| |
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| T |
22775224 |
tgaacagatatggagtaatggaagatacaagagtgtagaacacagagcaatgacaaataaaaacaagagaaggacttctcatgcaacatttgtgtttcct |
22775125 |
T |
|
| Q |
377 |
cgagatgacgttgaagttgagccctttgatcatatgatagatgctcaaaaccccaagatgtaccagaaagtcaagtatggagattatctgaggcattcct |
476 |
Q |
| |
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|||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||| ||| |
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| T |
22775124 |
cgagatgatgttgaagtggagccctttgatcatatgatagatgctcaaaaccctaagatgtaccagaaagtgttgtatggagattatttgaggcaatcca |
22775025 |
T |
|
| Q |
477 |
taaagagaaaaatggagcgaaaaacacacaccgatgtggcaaagataaagg |
527 |
Q |
| |
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| ||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
22775024 |
tgaagagaaaaatggagggaaaaacacacactgatgtggcaaagataaagg |
22774974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 277 - 531
Target Start/End: Complemental strand, 22765404 - 22765150
Alignment:
| Q |
277 |
tgaacagatattgagtaatggaaaatacaagagtgtagaacacagggtaatgacaaatcagaacaaaagaaggatttcttatgcatcatttttattccct |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| | | | |||||| ||||||||||||||| ||| ||||||||||||| ||||| |
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| T |
22765404 |
tgaacagatattgagtaatggaaaatacaaaagtgtagaacacagagcagtaacaaataagaacaaaagaaggacttcccatgcatcatttttgatccct |
22765305 |
T |
|
| Q |
377 |
cgagatgacgttgaagttgagccctttgatcatatgatagatgctcaaaaccccaagatgtaccagaaagtcaagtatggagattatctgaggcattcct |
476 |
Q |
| |
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|||||||| |||||| ||||||| ||||||||||||||||||||| ||||| |||| || |||||||||||||||| |||||||||| | ||||| ||| |
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| T |
22765304 |
cgagatgatgttgaaattgagccatttgatcatatgatagatgctgaaaacaccaaaatttaccagaaagtcaagtttggagattatttaaggcaatcca |
22765205 |
T |
|
| Q |
477 |
taaagagaaaaatggagcgaaaaacacacaccgatgtggcaaagataaaggaaca |
531 |
Q |
| |
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| ||||||||||||||| |||||||||| | |||||||| |||||||||||||| |
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| T |
22765204 |
tgaagagaaaaatggagggaaaaacacatattgatgtggccaagataaaggaaca |
22765150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 281 - 539
Target Start/End: Original strand, 16085023 - 16085281
Alignment:
| Q |
281 |
cagatattgagtaatggaaaatacaagagtgtagaacacagggtaatgacaaatcagaacaaaagaaggatttcttatgcatcatttttattccctcgag |
380 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| | | |||||| ||||||| | |||||| ||||||||| ||||| | |||||||||| |
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|
| T |
16085023 |
cagatatggagtaatggaaaatacaagagtgtagaacacagagcg-tcacaaataagaacaagaaaaggatgtcttatgcaacatttgtgttccctcgag |
16085121 |
T |
|
| Q |
381 |
atgacgttgaagttgagccctttgatcatatgatagatgctcaaaaccccaagatgtaccagaaagtcaagtatggagattatctgaggcattcc-ttaa |
479 |
Q |
| |
|
| || |||||||||||||||||||| ||||||||| ||||| |||||||||| |||||||||||||||| ||||||||||||| ||||| | ||| || | |
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| T |
16085122 |
aagatgttgaagttgagccctttgaccatatgataaatgctgaaaaccccaaaatgtaccagaaagtcaggtatggagattatttgagggaatcctttga |
16085221 |
T |
|
| Q |
480 |
agagaaaaatggagcgaaaaacacacaccgatgtggcaaagataaaggaacatgtaatag |
539 |
Q |
| |
|
| |||| | |||| |||||||| |||| ||| |||||| || ||||||| ||||||||| |
|
|
| T |
16085222 |
aaagaatataggagggaaaaacaaacactgatatggcaaggagaaaggaatatgtaatag |
16085281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 288 - 529
Target Start/End: Original strand, 23278357 - 23278598
Alignment:
| Q |
288 |
tgagtaatggaaaatacaagagtgtagaacacagggtaatgacaaatcagaacaaaagaaggatttcttatgcatcatttttattccctcgagatgacgt |
387 |
Q |
| |
|
||||||||||||||||||||||||| || || || | ||||||||| ||||||| ||||||| ||||| || ||||||||| ||||| || ||||| | |
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|
| T |
23278357 |
tgagtaatggaaaatacaagagtgtggagcatagagctatgacaaataagaacaagagaaggacttcttttgtatcatttttgttcccccgggatgatgc |
23278456 |
T |
|
| Q |
388 |
tgaagttgagccctttgatcatatgatagatgctcaaaaccccaagatgtaccagaaagtcaagtatggagattatctgaggcattccttaaagagaaaa |
487 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||| |||||| |||||||||||| || || ||| |||||||| ||| ||||||| |||| || || ||| |
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|
| T |
23278457 |
tgaacttgggccctttgatcatatgatagatgatcaaaatcccaagatgtacaaggaaatcacttatggagagtatttgaggcacaccttgaataggaaa |
23278556 |
T |
|
| Q |
488 |
atggagcgaaaaacacacaccgatgtggcaaagataaaggaa |
529 |
Q |
| |
|
|||| |||||||||| ||||||| | | |||||||||||| |
|
|
| T |
23278557 |
ttggaaggaaaaacacagaccgatgcgacgaagataaaggaa |
23278598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 22766193 - 22766121
Alignment:
| Q |
13 |
caaaggaaattgggtaccggttaaaccaatatcagatgctctagttatcaatgttggagatgttatagaggta |
85 |
Q |
| |
|
||||||||||||||| || |||| ||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
22766193 |
caaaggaaattgggttccagttattccaatatcagatgctcttgttgtcaatgttggagatgttatagaggta |
22766121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 22775709 - 22775637
Alignment:
| Q |
14 |
aaaggaaattgggtaccggttaaaccaatatcagatgctctagttatcaatgttggagatgttatagaggtaa |
86 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||||| ||||||| |||||||| |||||||||| |
|
|
| T |
22775709 |
aaaggaaattgggtacccgttactccaatatcagatgctctagttgtcaatgtcggagatgtaatagaggtaa |
22775637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 16084177 - 16084250
Alignment:
| Q |
13 |
caaaggaaattgggtaccggttaaaccaatatcagatgctctagttatcaatgttggagatgttatagaggtaa |
86 |
Q |
| |
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||||||||||||||||||||| | || ||| |||||||||||||| ||||||||||||||| |||||||||| |
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| T |
16084177 |
caaaggaaattgggtaccggtaactcccatagcagatgctctagttgtcaatgttggagatgcaatagaggtaa |
16084250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 439
Target Start/End: Complemental strand, 22770422 - 22770263
Alignment:
| Q |
280 |
acagatattgagtaatggaaaatacaagagtgtagaacacagggtaatgacaaatcagaacaaaagaaggatttcttatgcatcatttttattccctcga |
379 |
Q |
| |
|
||||||| |||||||||| |||||||||||||| ||||| || | ||| |||||| ||||||| | ||||| | ||| | ||||| ||| ||||||| |
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|
| T |
22770422 |
acagatactgagtaatggcaaatacaagagtgtggaacatagagcaatcacaaataagaacaagaaaaggactacttttatatcatatttgttccctcag |
22770323 |
T |
|
| Q |
380 |
gatgacgttgaagttgagccctttgatcatatgatagatgctcaaaaccccaagatgtac |
439 |
Q |
| |
|
| ||| | |||| | | | | || |||||||||||||||| |||||| |||||||||||| |
|
|
| T |
22770322 |
ggtgatgctgaaatcggggcattagatcatatgatagatgatcaaaatcccaagatgtac |
22770263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 23278110 - 23278182
Alignment:
| Q |
13 |
caaaggaaattgggtaccggttaaaccaatatcagatgctctagttatcaatgttggagatgttatagaggta |
85 |
Q |
| |
|
|||||||||||||||||| |||| |||||| || ||||| |||| ||||| |||||||||| ||||||||| |
|
|
| T |
23278110 |
caaaggaaattgggtaccaattaatccaataccaaatgctttagtggtcaatcttggagatgtaatagaggta |
23278182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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