View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9906_low_10 (Length: 220)
Name: NF9906_low_10
Description: NF9906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9906_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 18318391 - 18318579
Alignment:
| Q |
16 |
cagtttctcaccatcaccaacagtctccgattctcactcaaagtcagcaaagtcacatggttccatcaaataaatatccgtttcattccttctctatcaa |
115 |
Q |
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| T |
18318391 |
cagtttctcaccgtcaccaacagtctccgattctcactcaaagtcagcaaagttgcatggttccattaaataaatatccgtttcgttccttctctatcaa |
18318490 |
T |
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| Q |
116 |
gcctcttagatagattctccaacttccactctcttcacctcacataccacttcaaagttaacctcaatatgcttctctgccaaatctct |
204 |
Q |
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| T |
18318491 |
gcctcttagatagattctccaacctccactctcttcacctcacataccacttcaaagttaacctaaatatgcttctctgccaaatctct |
18318579 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 15837985 - 15838026
Alignment:
| Q |
16 |
cagtttctcaccatcaccaacagtctccgattctcactcaaa |
57 |
Q |
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| T |
15837985 |
cagtttctctccatcaccaaccgtctccgattctccctcaaa |
15838026 |
T |
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