View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9906_low_5 (Length: 280)
Name: NF9906_low_5
Description: NF9906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9906_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 14 - 262
Target Start/End: Complemental strand, 43533019 - 43532771
Alignment:
| Q |
14 |
agagctttagatgttatctatgagctaggattggagaggtaaattaatgtttccactattagagtctcaaatatttttattatgagcttataaaagttat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43533019 |
agagctttagatgttatctatgagctaggattggagaggtaaattaatgtttccactattagagtctcaaatatttttattatgagcttataaaagttat |
43532920 |
T |
|
| Q |
114 |
aatcatgcatggaaataggtgccaagacactatgataggaggttcctttgtccgaggagtatctggtggagagaggaagagagtttgtattggaaatgag |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43532919 |
aatcatgcatggaaataggtgccaagacactatgataggaggttcctttgtccgaggagtatctggtggagagaggaagagagtttgtattggaaatgag |
43532820 |
T |
|
| Q |
214 |
attataatcaatccttctcttctgtttcttgatgaaccaacatctggtt |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43532819 |
attataatcaatccttctcttctgtttcttgatgaaccaacatctggtt |
43532771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 118 - 262
Target Start/End: Original strand, 24126561 - 24126705
Alignment:
| Q |
118 |
atgcatggaaataggtgccaagacactatgataggaggttcctttgtccgaggagtatctggtggagagaggaagagagtttgtattggaaatgagatta |
217 |
Q |
| |
|
||||||| ||| ||||||||||| |||||||| || ||||| ||||| || |||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
24126561 |
atgcatgaaaacaggtgccaagatactatgatcggtggttcatttgttcgtggagtatccggtggagagaggaagagagtttgtattggtaatgagatta |
24126660 |
T |
|
| Q |
218 |
taatcaatccttctcttctgtttcttgatgaaccaacatctggtt |
262 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24126661 |
taatcaatccttccattctgtttcttgatgaaccaacatctggtt |
24126705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 118 - 262
Target Start/End: Original strand, 24144787 - 24144931
Alignment:
| Q |
118 |
atgcatggaaataggtgccaagacactatgataggaggttcctttgtccgaggagtatctggtggagagaggaagagagtttgtattggaaatgagatta |
217 |
Q |
| |
|
||||||| ||| ||||||||| | |||||||| || | ||| ||||| | ||| |||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
24144787 |
atgcatgaaaacaggtgccaaaatactatgattggtgattcgtttgttcccggattatctggtggagagaggaagagagtttgtattggcaatgagatca |
24144886 |
T |
|
| Q |
218 |
taatcaatccttctcttctgtttcttgatgaaccaacatctggtt |
262 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24144887 |
taatcaatccttccattctgtttcttgatgaaccaacatctggtt |
24144931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University