View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9906_low_9 (Length: 238)
Name: NF9906_low_9
Description: NF9906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9906_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 24124221 - 24124429
Alignment:
| Q |
18 |
caaaatcacttgcaaatttacatcttaatatatttcaccatctccacattatctggagccttatagaggaagatgcagtcatttcagagttttcaaattg |
117 |
Q |
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| T |
24124221 |
caaaatcacttacaaatttacatcttaatatatttcaccatctccacattatctggagccttatagaggaagatgcagtaatttcagagttttcaaattg |
24124320 |
T |
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| Q |
118 |
cccacaacacaagatataatatgaacgatatctttgatttaacgtcatccacctgttccaataagtatcgagaaaataaaagaaagattattcaata-aa |
216 |
Q |
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|||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||| || |
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| T |
24124321 |
cccacaacacaagatataatatgaacgatatccttgattcaacatcatccacctgtttcaataagtattgagaaaataaaagaaagattattcaatataa |
24124420 |
T |
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| Q |
217 |
ccaacacca |
225 |
Q |
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||||||||| |
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| T |
24124421 |
ccaacacca |
24124429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 45164214 - 45164110
Alignment:
| Q |
18 |
caaaatcacttgcaaatttacatcttaatatatttcaccatctccacattatctggagccttatagaggaagatgca----gtcatttcagagttttcaa |
113 |
Q |
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||||||||||| ||||||||||||||| |||| ||||||||||||||| ||| ||||| ||||||| |||||||| ||||||||||||||||||| |
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| T |
45164214 |
caaaatcacttacaaatttacatcttactatacttcaccatctccacactatttggagttttatagaaaaagatgcagtcagtcatttcagagttttcaa |
45164115 |
T |
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| Q |
114 |
attgc |
118 |
Q |
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||||| |
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| T |
45164114 |
attgc |
45164110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 126 - 223
Target Start/End: Complemental strand, 45163930 - 45163832
Alignment:
| Q |
126 |
acaagatataatatgaacgatatctttgatttaacgtcatccacctgttccaataagtatcgagaaaataaaagaaagattattcaata-aaccaacac |
223 |
Q |
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||||||| ||| |||| |||||| |||||| |||||||||||||||||||| |||| ||||||||||||||||| | |||||||||| ||||||||| |
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| T |
45163930 |
acaagatgtaaaatgattgatatccttgattcaacgtcatccacctgttccactaagcatcgagaaaataaaagacaagttattcaatataaccaacac |
45163832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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