View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9907_12 (Length: 328)

Name: NF9907_12
Description: NF9907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9907_12
NF9907_12
[»] chr2 (4 HSPs)
chr2 (17-328)||(31484243-31484556)
chr2 (146-326)||(14294762-14294942)
chr2 (148-325)||(10927112-10927288)
chr2 (149-319)||(27546825-27546994)
[»] chr5 (8 HSPs)
chr5 (151-323)||(31042949-31043121)
chr5 (200-323)||(31058223-31058346)
chr5 (62-205)||(31056844-31056987)
chr5 (153-321)||(20534645-20534813)
chr5 (107-199)||(20116673-20116765)
chr5 (154-326)||(21941293-21941465)
chr5 (153-212)||(11848135-11848194)
chr5 (148-210)||(23350515-23350577)
[»] chr8 (4 HSPs)
chr8 (148-326)||(26674263-26674441)
chr8 (39-240)||(16668370-16668571)
chr8 (252-326)||(16667563-16667637)
chr8 (248-292)||(14825116-14825160)
[»] chr3 (4 HSPs)
chr3 (158-320)||(13423519-13423681)
chr3 (147-265)||(45295037-45295155)
chr3 (148-297)||(25477756-25477904)
chr3 (247-322)||(25626565-25626640)
[»] chr4 (6 HSPs)
chr4 (148-326)||(13069177-13069355)
chr4 (147-271)||(4216085-4216209)
chr4 (174-326)||(21883138-21883292)
chr4 (148-270)||(31180395-31180517)
chr4 (147-271)||(3796961-3797085)
chr4 (147-213)||(21880762-21880828)
[»] chr1 (5 HSPs)
chr1 (147-326)||(21545088-21545269)
chr1 (57-199)||(7330151-7330293)
chr1 (243-292)||(12864949-12864998)
chr1 (153-210)||(45907910-45907967)
chr1 (148-225)||(50517893-50517970)
[»] chr7 (6 HSPs)
chr7 (57-326)||(19336851-19337120)
chr7 (147-321)||(42574737-42574911)
chr7 (148-304)||(5236702-5236858)
chr7 (148-264)||(44712374-44712490)
chr7 (147-241)||(8039214-8039308)
chr7 (148-210)||(41254341-41254403)
[»] chr6 (1 HSPs)
chr6 (172-319)||(26547717-26547862)
[»] scaffold0008 (1 HSPs)
scaffold0008 (147-212)||(259895-259960)


Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 17 - 328
Target Start/End: Complemental strand, 31484556 - 31484243
Alignment:
Q  17 tacaaatcttggttatctcctaacatcataacccatcacccgacatagtttattatagtcaacaatttgactgatatat--ttagcaggcaaattttatg 114  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||    
T  31484556 tacaaatcttgattatctcctaacatcataacccgtcacccgacatagtttattatagtcaacaatttgattgatatataattagcaggcaaattttatg 31484457  T
Q  115 catcatcttgacagtgttgtctccaaggtgtagaagtgggaggaattggacaaccaaccttcaaatatataatcataaaatggttatcattcacatgtgt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31484456 catcatcttgacagtgttgtctccaaggtgtagaagtgggaggaattggacaaccaaccttcaaatatataatcataaaatggttgtcattcacatgtgt 31484357  T
Q  215 catgcacatcattcagtctctatgtgatggtgcaccacatagagggaaaaaggttttcgatcgccctttctcaatggatagtataacaaccacatgtttg 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31484356 catgcacatcattcagtctctatgtgatggtgcaccacatagagggaaaaaggttttcgatcgccctttctcaatggatagtataacaaccacatgtttg 31484257  T
Q  315 tatctctgtgcatt 328  Q
    ||||||||||||||    
T  31484256 tatctctgtgcatt 31484243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 146 - 326
Target Start/End: Complemental strand, 14294942 - 14294762
Alignment:
Q  146 agaagtgggaggaattggacaaccaaccttcaaatatataatcataaaatggttatcattcacatgtgtcatg-cacatcattcagtctctatgtgatgg 244  Q
    |||||||| |||||||||| ||||| ||||||||||||| |||||||||||||| | ||||||||||| | || |||| |||||| ||||||||||| ||    
T  14294942 agaagtggaaggaattggataaccatccttcaaatatatcatcataaaatggttgttattcacatgtg-cttgacacaacattcaatctctatgtgaagg 14294844  T
Q  245 tgcaccacatagagggaaaaaggttttcgatcgccctttctcaatggatagtataacaaccacatgtttgtatctctgtgca 326  Q
    | |||||| ||||||||||||||||||| || |||||||||| ||||| | || ||| |||||||| |||||||| ||||||    
T  14294843 ttcaccacgtagagggaaaaaggttttcaattgccctttctcgatggacaatagaaccaccacatgcttgtatctatgtgca 14294762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 148 - 325
Target Start/End: Complemental strand, 10927288 - 10927112
Alignment:
Q  148 aagtgggaggaattggacaaccaaccttcaaatatataatcataaaatggttatcattcacatgtgtcatgcacatcattcagtctctatgtgatggtgc 247  Q
    |||||||||||||| |||||||| ||||||||||||| |||||||||||||| |||||||||||||| |  ||||||| ||||||||||||||   ||||    
T  10927288 aagtgggaggaatttgacaaccatccttcaaatatattatcataaaatggttttcattcacatgtgttagacacatcaatcagtctctatgtggcagtgc 10927189  T
Q  248 accacatagagggaaaaaggttttcgatcgccctttctcaatggatagtataacaaccacatgtttgtatctctgtgc 325  Q
    ||| |||||||| ||| ||||||  |||||||||||  ||||||| | || ||| | | |||||||||||||||||||    
T  10927188 accgcatagaggcaaataggtttctgatcgcccttt-gcaatggacaatagaaccatcgcatgtttgtatctctgtgc 10927112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 149 - 319
Target Start/End: Complemental strand, 27546994 - 27546825
Alignment:
Q  149 agtgggaggaattggacaaccaaccttcaaatatataatcataaaatggttatcattcacatgtgtcatgcacatcattcagtctctatgtgatggtgca 248  Q
    ||||||||||||||||||||||  ||||||||| |  |||||||||||||| ||||||||||| || |  ||||||||||  | |||||| ||| |||||    
T  27546994 agtgggaggaattggacaaccattcttcaaatacaccatcataaaatggttgtcattcacatgagttagacacatcattcgatttctatgcgattgtgca 27546895  T
Q  249 ccacatagagggaaaaaggttttcgatcgccctttctcaatggatagtataacaaccacatgtttgtatct 319  Q
    || |||||  |||||||  ||||||||||| ||||| | ||||| || | |||||||||||||||||||||    
T  27546894 ccgcatag-tggaaaaatattttcgatcgctctttcacgatggacagcagaacaaccacatgtttgtatct 27546825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 151 - 323
Target Start/End: Original strand, 31042949 - 31043121
Alignment:
Q  151 tgggaggaattggacaaccaaccttcaaatatataatcataaaatggttatcattcacatgtgtcatgcacatcattcagtctctatgtgatggtgcacc 250  Q
    |||||||||||||| ||||| | ||||||||||| |||||||||||||| ||||||||||||||||  ||||||| ||   |||||||||||||||||||    
T  31042949 tgggaggaattggaaaaccatcattcaaatatattatcataaaatggttgtcattcacatgtgtcagacacatcaatcgacctctatgtgatggtgcacc 31043048  T
Q  251 acatagagggaaaaaggttttcgatcgccctttctcaatggatagtataacaaccacatgtttgtatctctgt 323  Q
    ||||||||||||| |||||| | ||| ||||||| |||| || |||| ||| |||||||||||||||||||||    
T  31043049 acatagagggaaataggtttccaatcaccctttcgcaatagacagtagaaccaccacatgtttgtatctctgt 31043121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 200 - 323
Target Start/End: Original strand, 31058223 - 31058346
Alignment:
Q  200 atcattcacatgtgtcatgcacatcattcagtctctatgtgatggtgcaccacatagagggaaaaaggttttcgatcgccctttctcaatggatagtata 299  Q
    |||||||||||||||||  ||||||| |||| |||||||| ||||||||||||||||||||||| ||| || | ||| ||||||| |||| || |||| |    
T  31058223 atcattcacatgtgtcagacacatcaatcagcctctatgttatggtgcaccacatagagggaaatagggttccaatcaccctttcgcaatagacagtaga 31058322  T
Q  300 acaaccacatgtttgtatctctgt 323  Q
    || |||||||||||||||||||||    
T  31058323 accaccacatgtttgtatctctgt 31058346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 62 - 205
Target Start/End: Original strand, 31056844 - 31056987
Alignment:
Q  62 tagtttattatagtcaacaatttgactgatatatttagcaggcaaattttatgcatcatcttgacagtgttgtctccaaggtgtagaagtgggaggaatt 161  Q
    ||||| |||||||||||| ||  | ||||||||| || ||||| |  ||| |||||||||| || |||||||||||||  | |   ||||||||||||||    
T  31056844 tagttcattatagtcaaccatccgtctgatatatctatcaggctatctttttgcatcatctcgagagtgttgtctccatagcgggcaagtgggaggaatt 31056943  T
Q  162 ggacaaccaaccttcaaatatataatcataaaatggttatcatt 205  Q
    ||||||||| | ||||||||||| |||||||||||||| |||||    
T  31056944 ggacaaccatcattcaaatatattatcataaaatggttgtcatt 31056987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 321
Target Start/End: Complemental strand, 20534813 - 20534645
Alignment:
Q  153 ggaggaattggacaaccaaccttcaaatatataatcataaaatggttatcattcacatgtgtcatgcacatcattcagtctctatgtgatggtgcaccac 252  Q
    |||||||||||||||||| || |||||||||  ||||||||||| ||   |||||| ||||  |  ||| |||||| |||| |||| || ||| |||  |    
T  20534813 ggaggaattggacaaccatccctcaaatataccatcataaaatgattgatattcacgtgtgctagacacttcattcggtctttatgcgaaggttcactgc 20534714  T
Q  253 atagagggaaaaaggttttcgatcgccctttctcaatggatagtataacaaccacatgtttgtatctct 321  Q
     |||||||||||||||||||||| || ||||||  ||||| |||| ||| ||||||||  |||||||||    
T  20534713 gtagagggaaaaaggttttcgattgcactttcttgatggacagtagaaccaccacatgcatgtatctct 20534645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 199
Target Start/End: Complemental strand, 20116765 - 20116673
Alignment:
Q  107 attttatgcatcatcttgacagtgttgtctccaaggtgtagaagtgggaggaattggacaaccaaccttcaaatatataatcataaaatggtt 199  Q
    ||||| |||||||||||||| |||||||||||| || | ||||||| | | ||||||||||||  | ||||||||||| | ||||||||||||    
T  20116765 attttttgcatcatcttgactgtgttgtctccatggcgcagaagtgagcgaaattggacaaccctctttcaaatatattaccataaaatggtt 20116673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 326
Target Start/End: Complemental strand, 21941465 - 21941293
Alignment:
Q  154 gaggaattggacaaccaaccttcaaatatataatcataaaatggttatcattcacatgtgtcatgcacatcattcagtctctatgtgatggtgcaccaca 253  Q
    |||||||||||||||||  |||||||||||  ||||||||||  || |||||||||||||| |  || |||||||  | || |||  | ||||||||       
T  21941465 gaggaattggacaaccattcttcaaatataccatcataaaataattttcattcacatgtgttagacaaatcattcgttgtcaatgcaaaggtgcaccgag 21941366  T
Q  254 tagagggaaaaaggttttcgatcgccctttctcaatggatagtataacaaccacatgtttgtatctctgtgca 326  Q
    |||||||||||| ||||  ||| ||||||| |  ||||| |||| ||| |||||||| |||||||| ||||||    
T  21941365 tagagggaaaaaagtttctgattgccctttattgatggacagtagaaccaccacatgcttgtatctatgtgca 21941293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 212
Target Start/End: Original strand, 11848135 - 11848194
Alignment:
Q  153 ggaggaattggacaaccaaccttcaaatatataatcataaaatggttatcattcacatgt 212  Q
    |||||||||||||||||| |||||||||| |  || ||||||||||| ||||||||||||    
T  11848135 ggaggaattggacaaccatccttcaaataaaccataataaaatggttgtcattcacatgt 11848194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 210
Target Start/End: Original strand, 23350515 - 23350577
Alignment:
Q  148 aagtgggaggaattggacaaccaaccttcaaatatataatcataaaatggttatcattcacat 210  Q
    ||||||||||||||||||||||| |||||||||  |    |||||||||||| ||||||||||    
T  23350515 aagtgggaggaattggacaaccatccttcaaatccaatgccataaaatggttgtcattcacat 23350577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 148 - 326
Target Start/End: Original strand, 26674263 - 26674441
Alignment:
Q  148 aagtgggaggaattggacaaccaaccttcaaatatataatcataaaatggttatcattcacatgtgtcatgcacatcattcagtctctatgtgatggtgc 247  Q
    ||||||||||||||||||||||| |||| |||||||| |||||||||||||| ||||||||||||| ||  ||||||| ||| ||||||||||| |||||    
T  26674263 aagtgggaggaattggacaaccatcctttaaatatattatcataaaatggttgtcattcacatgtgccagacacatcaatcactctctatgtgacggtgc 26674362  T
Q  248 accacatagagggaaaaaggttttcgatcgccctttctcaatggatagtataacaaccacatgtttgtatctctgtgca 326  Q
    | |  ||| ||||||||||||||  ||||||  |||||||||||| |||| | ||||||  ||||||||||| ||||||    
T  26674363 atcgtataaagggaaaaaggtttctgatcgctttttctcaatggacagtagaccaaccatgtgtttgtatctttgtgca 26674441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 240
Target Start/End: Complemental strand, 16668571 - 16668370
Alignment:
Q  39 acatcataacccatcacccgacatagtttattatagtcaacaatttgactgatatatttagcaggcaaattttatgcatcatcttgacagtgttgtctcc 138  Q
    |||| |||||||  ||||||||||||||  |||||||||   |||||||| |||||| || ||||  || ||| |||||||||| |||| ||||||||||    
T  16668571 acattataacccgccacccgacatagttcgttatagtcagttatttgactaatatatctatcaggtcaactttttgcatcatctcgacaatgttgtctcc 16668472  T
Q  139 aaggtgtagaagtgggaggaattggacaaccaaccttcaaatatataatcataaaatggttatcattcacatgtgtcatgcacatcattcagtctctatg 238  Q
       |||   |||||||||||||  ||||||||  |||||| ||||| |||||||||||||| ||||||||||||| ||| ||||| | ||| ||| ||||    
T  16668471 gtagtgggcaagtgggaggaatatgacaaccattcttcaagtatattatcataaaatggttgtcattcacatgtgccatacacattaatcactctgtatg 16668372  T
Q  239 tg 240  Q
    ||    
T  16668371 tg 16668370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 252 - 326
Target Start/End: Complemental strand, 16667637 - 16667563
Alignment:
Q  252 catagagggaaaaaggttttcgatcgccctttctcaatggatagtataacaaccacatgtttgtatctctgtgca 326  Q
    |||||||| |||||||||| ||||||||||||||||||| |||||| |||||  || ||||||||||||||||||    
T  16667637 catagaggaaaaaaggtttccgatcgccctttctcaatgtatagtagaacaatgacgtgtttgtatctctgtgca 16667563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 14825160 - 14825116
Alignment:
Q  248 accacatagagggaaaaaggttttcgatcgccctttctcaatgga 292  Q
    |||||||||||||||| |||||  ||||||||||||| |||||||    
T  14825160 accacatagagggaaataggttaccgatcgccctttcccaatgga 14825116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 158 - 320
Target Start/End: Original strand, 13423519 - 13423681
Alignment:
Q  158 aattggacaaccaaccttcaaatatataatcataaaatggttatcattcacatgtgtcatgcacatcattcagtctctatgtgatggtgcaccacataga 257  Q
    ||||||||||| | ||||||||||||  |||||||||||||| | ||||||||||||||  ||||||||||  | |||||| |||| ||||||| |||||    
T  13423519 aattggacaactatccttcaaatataccatcataaaatggttgtgattcacatgtgtcaaacacatcattcgatttctatgcgatgatgcaccatataga 13423618  T
Q  258 gggaaaaaggttttcgatcgccctttctcaatggatagtataacaaccacatgtttgtatctc 320  Q
    |||||||||||||  |||||||||||| ||||||| |||  ||||||||||||||||||||||    
T  13423619 gggaaaaaggtttatgatcgccctttcccaatggacagtgaaacaaccacatgtttgtatctc 13423681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 265
Target Start/End: Original strand, 45295037 - 45295155
Alignment:
Q  147 gaagtgggaggaattggacaaccaaccttcaaatatataatcataaaatggttatcattcacatgtgtcatgcacatcattcagtctctatgtgatggtg 246  Q
    ||||||||||||||| |||||| | | |||||||||||  |||| |||||||| |||||||||| |   |  ||||||||||| ||| |||| || ||||    
T  45295037 gaagtgggaggaatttgacaacaatcattcaaatatatcttcatcaaatggttgtcattcacatatcctagacacatcattcaatctatatgcgaaggtg 45295136  T
Q  247 caccacatagagggaaaaa 265  Q
    |||||| ||||||||||||    
T  45295137 caccacgtagagggaaaaa 45295155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 297
Target Start/End: Original strand, 25477756 - 25477904
Alignment:
Q  148 aagtgggaggaattggacaaccaaccttcaaatatataatcataaaatggttatcattcacatgtgtcatgcacatcattcagtctctatgtgatggtgc 247  Q
    ||||||||||| |  ||||| || ||||||||||||| ||||| |||||||| ||||||||| || || | ||||||| ||  | | ||||||   || |    
T  25477756 aagtgggaggagtatgacaatcatccttcaaatatattatcatgaaatggttgtcattcacacgtttcgtacacatcaatcgctttgtatgtggctgttc 25477855  T
Q  248 accacatagagggaaaaaggttttcgatcgccctttctcaatggatagta 297  Q
    | | |||||| ||||||||||||  |||||||||||||||||||| ||||    
T  25477856 atcgcataga-ggaaaaaggtttcagatcgccctttctcaatggacagta 25477904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 322
Target Start/End: Complemental strand, 25626640 - 25626565
Alignment:
Q  247 caccacatagagggaaaaaggttttcgatcgccctttctcaatggatagtataacaaccacatgtttgtatctctg 322  Q
    |||| |||||||| ||||||||||  |||||||||||| ||||||||| || |||||| || || |||||| ||||    
T  25626640 caccccatagaggaaaaaaggtttcagatcgccctttcgcaatggatattagaacaacgacgtggttgtatttctg 25626565  T

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Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 148 - 326
Target Start/End: Complemental strand, 13069355 - 13069177
Alignment:
Q  148 aagtgggaggaattggacaaccaaccttcaaatatataatcataaaatggttatcattcacatgtgtcatgcacatcattcagtctctatgtgatggtgc 247  Q
    |||||||||||||  |||||||| || |||||||||| ||||| |||| ||| || |||||||||| ||| |||||||  |  | | |||||| |||| |    
T  13069355 aagtgggaggaatatgacaaccatccatcaaatatattatcatgaaatagttgtcgttcacatgtggcatacacatcaagcgctatgtatgtggtggttc 13069256  T
Q  248 accacatagagggaaaaaggttttcgatcgccctttctcaatggatagtataacaaccacatgtttgtatctctgtgca 326  Q
    ||| |||||||| ||||||||||| | ||||||||||||||||||||||| |||||| || || |||||||||||||||    
T  13069255 accgcatagaggaaaaaaggttttaggtcgccctttctcaatggatagtagaacaacgacgtgattgtatctctgtgca 13069177  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 147 - 271
Target Start/End: Complemental strand, 4216209 - 4216085
Alignment:
Q  147 gaagtgggaggaattggacaaccaaccttcaaatatataatcataaaatggttatcattcacatgtgtcatgcacatcattcagtctctatgtgatggtg 246  Q
    ||||||||||||||||||||| || || |||||||||  ||||||||||||||||||||||||||||  |  ||||| |||| ||||||||| || |||     
T  4216209 gaagtgggaggaattggacaatcatccgtcaaatataccatcataaaatggttatcattcacatgtgctagacacattattcggtctctatgcgaaggtt 4216110  T
Q  247 caccacatagagggaaaaaggtttt 271  Q
    | |||| ||||||||||||||||||    
T  4216109 cgccacgtagagggaaaaaggtttt 4216085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 174 - 326
Target Start/End: Original strand, 21883138 - 21883292
Alignment:
Q  174 ttcaaatatataatcataaaatggttatcattcacatgtgtcatgcacatcattcagtct-ctatgtgatggtgcaccacatagagggaaaaaggttttc 272  Q
    ||||||||||  ||||||| |||||| |||||||||||||  |  |||||||||| || | |||||||| |||||||  | || ||||||||||||||||    
T  21883138 ttcaaatatactatcataatatggttgtcattcacatgtgctagacacatcattcggttttctatgtgaaggtgcactgcgtaaagggaaaaaggttttc 21883237  T
Q  273 gatcgccctttctcaatggatagtataacaaccacatg-tttgtatctctgtgca 326  Q
    ||| ||||||| || |||||||||| ||| || ||||| ||| ||||| ||||||    
T  21883238 gattgccctttatcgatggatagtagaaccacaacatgctttatatctatgtgca 21883292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 148 - 270
Target Start/End: Complemental strand, 31180517 - 31180395
Alignment:
Q  148 aagtgggaggaattggacaaccaaccttcaaatatataatcataaaatggttatcattcacatgtgtcatgcacatcattcagtctctatgtgatggtgc 247  Q
    ||||||||||||||  ||||||| ||||| ||||||  || ||||||||||||||||||||||| |  |  |||||||||| || | ||||  | |||||    
T  31180517 aagtgggaggaattatacaaccatccttctaatataccataataaaatggttatcattcacatgcgctagacacatcattcggtatatatgcaaaggtgc 31180418  T
Q  248 accacatagagggaaaaaggttt 270  Q
    |||||||| ||||||||||||||    
T  31180417 accacataaagggaaaaaggttt 31180395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 271
Target Start/End: Complemental strand, 3797085 - 3796961
Alignment:
Q  147 gaagtgggaggaattggacaaccaaccttcaaatatataatcataaaatggttatcattcacatgtgtcatgcacatcattcagtctctatgtgatggtg 246  Q
    ||||||||||||||||||||| || || ||| |||||  ||||||||||||||| ||||||||||||  |  ||||| |||| ||||||||| || ||||    
T  3797085 gaagtgggaggaattggacaatcatccgtcatatataccatcataaaatggttaccattcacatgtgctagacacattattcggtctctatgcgaaggtg 3796986  T
Q  247 caccacatagagggaaaaaggtttt 271  Q
      |||| || | |||||||||||||    
T  3796985 tgccacgtacaaggaaaaaggtttt 3796961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 213
Target Start/End: Original strand, 21880762 - 21880828
Alignment:
Q  147 gaagtgggaggaattggacaaccaaccttcaaatatataatcataaaatggttatcattcacatgtg 213  Q
    ||||||| || |||||||||| || | || |||||||| |||||||||||||| |||||||||||||    
T  21880762 gaagtggcagcaattggacaatcatcttttaaatatattatcataaaatggttgtcattcacatgtg 21880828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 147 - 326
Target Start/End: Complemental strand, 21545269 - 21545088
Alignment:
Q  147 gaagtgggaggaattggacaaccaaccttcaaatatataatcataaaatggttat--cattcacatgtgtcatgcacatcattcagtctctatgtgatgg 244  Q
    ||||||||||||| |||||||||| || |||||||||| |||||||||||||| |  ||||||||||||  |  |||||||||| ||||||||| || |     
T  21545269 gaagtgggaggaaatggacaaccatccatcaaatatatcatcataaaatggttttgtcattcacatgtgctagacacatcattcggtctctatgggaaga 21545170  T
Q  245 tgcaccacatagagggaaaaaggttttcgatcgccctttctcaatggatagtataacaaccacatgtttgtatctctgtgca 326  Q
    |||||| | ||||||||||||| |||| ||| | | ||| || ||||| | || ||| || |||||||||||||||||||||    
T  21545169 tgcaccgcgtagagggaaaaagatttttgattgtcgtttatcgatggacattagaaccactacatgtttgtatctctgtgca 21545088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 199
Target Start/End: Complemental strand, 7330293 - 7330151
Alignment:
Q  57 cgacatagtttattatagtcaacaatttgactgatatatttagcaggcaaattttatgcatcatcttgacagtgttgtctccaaggtgtagaagtgggag 156  Q
    |||||||||  |||||||||||| || |||  ||||||| || ||||| | ||||  |||| |||| |||| | |||||||||  |    ||||| ||||    
T  7330293 cgacatagtgcattatagtcaaccatctgatggatatatctatcaggctattttttggcattatctcgacaatattgtctccatagcacggaagttggag 7330194  T
Q  157 gaattggacaaccaaccttcaaatatataatcataaaatggtt 199  Q
    ||||||||||||||  |||||||||||| ||||||||||||||    
T  7330193 gaattggacaaccattcttcaaatatatcatcataaaatggtt 7330151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 292
Target Start/End: Original strand, 12864949 - 12864998
Alignment:
Q  243 ggtgcaccacatagagggaaaaaggttttcgatcgccctttctcaatgga 292  Q
    |||| |||||||||||||||| |||||| ||||||||||||| |||||||    
T  12864949 ggtggaccacatagagggaaataggtttccgatcgccctttcccaatgga 12864998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 45907910 - 45907967
Alignment:
Q  153 ggaggaattggacaaccaaccttcaaatatataatcataaaatggttatcattcacat 210  Q
    |||||||| ||||||||| |||||||||  | || |||||||||||| ||||||||||    
T  45907910 ggaggaatcggacaaccatccttcaaatccacaaccataaaatggttgtcattcacat 45907967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 225
Target Start/End: Complemental strand, 50517970 - 50517893
Alignment:
Q  148 aagtgggaggaattggacaaccaaccttcaaatatataatcataaaatggttatcattcacatgtgtcatgcacatca 225  Q
    |||| |||||||| ||||||||| |||||||||  | |  |||||||||||| |||||||||| |||||  |||||||    
T  50517970 aagtaggaggaatcggacaaccatccttcaaatccaaagccataaaatggttgtcattcacatatgtcaaacacatca 50517893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 57 - 326
Target Start/End: Original strand, 19336851 - 19337120
Alignment:
Q  57 cgacatagtttattatagtcaacaatttgactgatatatttagcaggcaaattttatgcatcatcttgacagtgttgtctcca-aggtgtagaagtggga 155  Q
    |||||||||| |||||||||| | ||  ||||||||||| ||  |||| |   || |||||||||| || ||||||||||||| || ||   ||||||||    
T  19336851 cgacatagttcattatagtcagccatccgactgatatatctattaggccagcgttttgcatcatctcgagagtgttgtctccatagctggc-aagtggga 19336949  T
Q  156 ggaattggacaaccaaccttcaaatatataatcataaaatggttatcattcacatgtgtcatgcacatcattcagtctctatgtgatggtgcaccacata 255  Q
    | |||||||||| || | |||||| |||| |||||||||||||| ||||||||||||  ||  ||||||| | |||||||||||||| ||||||   |||    
T  19336950 gaaattggacaatcatcattcaaaaatattatcataaaatggttgtcattcacatgtaccagacacatcaattagtctctatgtgatagtgcactggata 19337049  T
Q  256 gagggaaaaaggttttcgatcgccctttctcaatggatagtataacaaccacatgtttgtatctctgtgca 326  Q
    |||||||  ||||||  |||| ||||||| |  |||| |||| ||| ||||  ||| ||||||||||||||    
T  19337050 gagggaagtaggtttctgatctccctttcgctgtggacagtagaaccaccatctgtgtgtatctctgtgca 19337120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 147 - 321
Target Start/End: Complemental strand, 42574911 - 42574737
Alignment:
Q  147 gaagtgggaggaattggacaaccaaccttcaaatatataatcataaaatggttatcattcacatgtgtcatgcacatcattcagtctctatgtgatggtg 246  Q
    ||||||||||||||||||||  || |||| | |||||  |||||||||||||| ||| |||| |  |  |  ||| ||||||| | | ||||||||||||    
T  42574911 gaagtgggaggaattggacagtcatcctttagatataccatcataaaatggttgtcactcacgtaagctacacacgtcattcaatttatatgtgatggtg 42574812  T
Q  247 caccacatagagggaaaaaggttttcgatcgccctttctcaatggatagtataacaaccacatgtttgtatctct 321  Q
    |||| ||| ||||||||||||||||||||| ||| ||||| ||||| |||  |||||||| ||||||||||||||    
T  42574811 caccgcatcgagggaaaaaggttttcgatcaccccttctcgatggacagtcgaacaaccatatgtttgtatctct 42574737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 148 - 304
Target Start/End: Original strand, 5236702 - 5236858
Alignment:
Q  148 aagtgggaggaattggacaaccaaccttcaaatatataatcataaaatggttatcattcacatgtgtcatgcacatcattcagtctctatgtgatggtgc 247  Q
    |||||||||||||  |||||||| ||||||||| ||| ||||| |||||||| |||||||| |||| ||| ||||||| ||  ||  |||||| |||| |    
T  5236702 aagtgggaggaataagacaaccatccttcaaatgtattatcatgaaatggttgtcattcacttgtgccatacacatcaatcgctcaatatgtggtggttc 5236801  T
Q  248 accacatagagggaaaaaggttttcgatcgccctttctcaatggatagtataacaac 304  Q
    |||  ||||||| ||||||||||   || ||||||||| | ||||||||| ||||||    
T  5236802 acccaatagaggaaaaaaggtttcaaattgccctttcttagtggatagtagaacaac 5236858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 264
Target Start/End: Complemental strand, 44712490 - 44712374
Alignment:
Q  148 aagtgggaggaattggacaaccaaccttcaaatatataatcataaaatggttatcattcacatgtgtcatgcacatcattcagtctctatgtgatggtgc 247  Q
    |||||||||||||||||||| || ||||||||| ||| ||||| |||||||| ||||| ||||||| ||| ||||||| ||  ||| ||||||  ||| |    
T  44712490 aagtgggaggaattggacaatcatccttcaaatgtattatcatgaaatggttgtcattgacatgtgccatacacatcaatcgctctgtatgtggcggttc 44712391  T
Q  248 accacatagagggaaaa 264  Q
    ||| |||||||| ||||    
T  44712390 accccatagaggaaaaa 44712374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 241
Target Start/End: Complemental strand, 8039308 - 8039214
Alignment:
Q  147 gaagtgggaggaattggacaaccaaccttcaaatatataatcataaaatggttatcattcacatgtgtcatgcacatcattcagtctctatgtga 241  Q
    ||||||||||||||||||||| || | |||||| |||| || |||||||| || ||||||| ||| |  |  ||||||||||| | |||||||||    
T  8039308 gaagtgggaggaattggacaatcatctttcaaagatatcattataaaatgattgtcattcaaatgagctagacacatcattcaatttctatgtga 8039214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 210
Target Start/End: Original strand, 41254341 - 41254403
Alignment:
Q  148 aagtgggaggaattggacaaccaaccttcaaatatataatcataaaatggttatcattcacat 210  Q
    ||||||||||||| ||||||||| |||||||||  | |  |||||||||||| ||||||||||    
T  41254341 aagtgggaggaatcggacaaccatccttcaaatccaaagccataaaatggttgtcattcacat 41254403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 172 - 319
Target Start/End: Complemental strand, 26547862 - 26547717
Alignment:
Q  172 ccttcaaatatataatcataaaatggttatcattcacatgtgtcatgcacatcattcagtctctatgtgatggtgcaccacatagagggaaaaaggtttt 271  Q
    ||||||||||||  ||||| |||||||| |||||||||||||| |  |||||||||| |||||||||||| ||||||||   ||||||  |||||||||     
T  26547862 ccttcaaatataccatcatgaaatggttgtcattcacatgtgttagacacatcattcggtctctatgtgaaggtgcaccgtgtagagg--aaaaggtttc 26547765  T
Q  272 cgatcgccctttctcaatggatagtataacaaccacatgtttgtatct 319  Q
    | || ||||||  || ||||| |||| ||| |||||||| ||||||||    
T  26547764 ccattgcccttgttcgatggacagtaaaaccaccacatgattgtatct 26547717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 259895 - 259960
Alignment:
Q  147 gaagtgggaggaattggacaaccaaccttcaaatatataatcataaaatggttatcattcacatgt 212  Q
    |||||| ||||||||||||||| | ||||||||||||| |||| |||||| || ||||||||||||    
T  259895 gaagtgagaggaattggacaactatccttcaaatatatcatcaaaaaatgattttcattcacatgt 259960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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