View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9907_14 (Length: 306)
Name: NF9907_14
Description: NF9907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9907_14 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 26 - 306
Target Start/End: Complemental strand, 36373791 - 36373511
Alignment:
| Q |
26 |
ggatcttcttcagttggtaggctatcaaaattatccatgtaagcatcgattaattcctcacaggcatcagcatttaacgttctaccgtctttatgatcct |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
36373791 |
ggatcttcttcagttggtaggctatcaaaattatccatgtaagcatcgattacttcctcacaggcatcagcatttaacattctaccgcctttatgatcct |
36373692 |
T |
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| Q |
126 |
gttcttcatgatcatcgatactgtttgtcgttttcctttgaacaccttctttggattgtatagcttcccgtaaagttattaaacgcatatgctccttaca |
225 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||| ||| |||| |||||||||| |
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| T |
36373691 |
gttcttcatgatcatcgatactgtttgtcgttttcttttgaacaccttctttggattgtatcgcttcccataaagttatcaaatccataagctccttaca |
36373592 |
T |
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| Q |
226 |
caaccgccttctcttaagcttctttgtgcagaaattattaacatgtcccgaagaaacattataaccaccttcttcatcaca |
306 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36373591 |
caaccgccttctcttaaacttctttgtgcagaaattattaacatgtcccgaagaaacattataaccaccttcttcatcaca |
36373511 |
T |
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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 32251706 - 32251813
Alignment:
| Q |
29 |
tcttcttcagttggtaggctatcaaaattatccatgtaagcatcgattaattcctcacaggcatcagcatttaacgttctaccgtctttatgatcctgtt |
128 |
Q |
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||||||||||||||||| ||||| ||||| | ||||||| ||| |||| ||||| | |||||||||||| || ||||||||| |||||||||| |||| |
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| T |
32251706 |
tcttcttcagttggtagactatcgaaattcttcatgtaactatctattatttccttgcgggcatcagcattgaatgttctaccgcctttatgatcttgtt |
32251805 |
T |
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| Q |
129 |
cttcatga |
136 |
Q |
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|||||||| |
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| T |
32251806 |
cttcatga |
32251813 |
T |
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