View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9907_3 (Length: 442)
Name: NF9907_3
Description: NF9907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9907_3 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 88 - 399
Target Start/End: Original strand, 13885153 - 13885464
Alignment:
| Q |
88 |
aacgacagcggcatcaatccaccgggatcgaaacatttgagacagtcaaagcttaacggaactgattgtgcaaacacattgaagtggttaggtgagagtg |
187 |
Q |
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| T |
13885153 |
aacgacagcggcatcgatccaccgggatcgaaacatttgagacagtcgaagcttaacagaactgattgtgcaaacacattgaagtggttaggtgaaagta |
13885252 |
T |
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| Q |
188 |
attgaaattttacctcacccaattgttgttctaaatagacattcgttcctattggaagagtgttggcaatctcttgataggtgaatttgaagtttgacca |
287 |
Q |
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|||||||||||||||||||||||||||||| | |||||| | ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
13885253 |
attgaaattttacctcacccaattgttgttttgaatagaaagtcgttcctattggaagagtgttggcaatctcttgacgggtgaatctgaagtttgacct |
13885352 |
T |
|
| Q |
288 |
cggcgtttgttgtttacaaatgaaagattcctcagaatcttcaacaatttcattatcttctacatgtttcgctggtatcagagatcgttgggaatcacct |
387 |
Q |
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| T |
13885353 |
cggcgtttgttgtttacaactgaaagattcctcagaatcttcaacaatttcattatcttctacatgttttgctgggatccgagattgttgggaatcaccc |
13885452 |
T |
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| Q |
388 |
tgtgaattttca |
399 |
Q |
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|||||||||||| |
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| T |
13885453 |
tgtgaattttca |
13885464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 442
Target Start/End: Original strand, 13885340 - 13885392
Alignment:
| Q |
390 |
tgaattttcaccacggcgtttgttgtttacaaatgaaagattcctcagaatct |
442 |
Q |
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| T |
13885340 |
tgaagtttgacctcggcgtttgttgtttacaactgaaagattcctcagaatct |
13885392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 37191523 - 37191319
Alignment:
| Q |
1 |
aaactccaccattcaaaagctgcccacggcggagccattgtacacggcaatgagaacaacgaatttgaaacagaaaattgtgggagaaacgacagcggca |
100 |
Q |
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| T |
37191523 |
aaactccaccattcaaaagctgcccacgacggagccattgtacacggcaatgagaacaacgaattcgaaacataaaattgtgggagaaacgacagcggaa |
37191424 |
T |
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| Q |
101 |
-tcaatccaccgggatcgaaacatttgagacagtcaaagcttaacggaactgattgtgcaaacacattgaagtggttaggtgagagtgattgaaatttta |
199 |
Q |
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| T |
37191423 |
atcaatccatggggatcgaaacatttgagacagtcgaagcttagcggaactgattgtgcaaacacattgaagtggttaggtgagagtgattgaaatttta |
37191324 |
T |
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| Q |
200 |
cctca |
204 |
Q |
| |
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||||| |
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| T |
37191323 |
cctca |
37191319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 22517918 - 22518121
Alignment:
| Q |
1 |
aaactccaccattcaaaagctgcccacggcggagccattgtacacggcaatgagaacaacgaatttgaaacagaaaattgtgggagaaacgacagcggca |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||| | |
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| T |
22517918 |
aaactccaccattcaaatgctgcccacggcggagccattgtacacggcaatgagaacaacgaatttgaaatagaaaattgtgggaaaaacgaaagcggta |
22518017 |
T |
|
| Q |
101 |
tcaatccaccgggatcgaaacatttgagacagtcaaagcttaacggaactgattgtgcaaacacattgaagtggttaggtgagagtgattgaaattttac |
200 |
Q |
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|| ||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||| | ||||||||||| ||||||||||||||||||||| |
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| T |
22518018 |
tcgatccaccgggatcgaaacatttgagacagtcgaagcttaaaggaattgattgtgcaaacacttggaagtggttagatgagagtgattgaaattttac |
22518117 |
T |
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| Q |
201 |
ctca |
204 |
Q |
| |
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|||| |
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| T |
22518118 |
ctca |
22518121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 202
Target Start/End: Complemental strand, 33457255 - 33457169
Alignment:
| Q |
116 |
cgaaacatttgagacagtcaaagcttaacggaactgattgtgcaaacacattgaagtggttaggtgagagtgattgaaattttacct |
202 |
Q |
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|||||||||||| | |||| || ||||| |||| ||||| || | |||||||||| |||||| |||||||||| ||||||||||| |
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| T |
33457255 |
cgaaacatttgacagagtccaaccttaaaggaattgattatgaagacacattgaatgtgttaggcgagagtgattaaaattttacct |
33457169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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