View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9907_4 (Length: 438)
Name: NF9907_4
Description: NF9907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9907_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 3 - 438
Target Start/End: Complemental strand, 22517560 - 22517127
Alignment:
| Q |
3 |
catctccaacaacaccggtgtgttttattctgcagatgagtattacaatcagatgataaaaaatcatccacaacttatttcaattgaaacaaaccacaaa |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
22517560 |
catctccaacaacaccggtgtgttttattctgcagatgagtattacagtcagatgatcaaaaatcatccacaacttgtttcaattgaaacaaaccacaaa |
22517461 |
T |
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| Q |
103 |
ggtgggattaatttgaattctaccaacttctctggattttcaaacatcaaaaacttgtacataactggacaccataatggagccataactttttgggatg |
202 |
Q |
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| T |
22517460 |
ggtgggattaacttgaattctaccaacttctctggattttcaaacatcaaaaacttgtacataactggacaccataatggaggcataactttttgggatg |
22517361 |
T |
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| Q |
203 |
catcaggccccttcttcatcacagttttgcaattaaagcagcagagtaaaattgatcattctttaagtggtgttcccttgacagtattatctatcctgac |
302 |
Q |
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||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
22517360 |
catcaggtcccttcttcatcacaggtttgcaattaaagcagcagagtaaaaatgatcattctttaagtggtgttcccttgacagtatta--tattttgac |
22517263 |
T |
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| Q |
303 |
atcaactctcttcgccttgtttctggtgaccaaagtggaatgatattggatggacagtgtgaaccaattacaagaattttgcaagatgtgatagcaggtt |
402 |
Q |
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| T |
22517262 |
atcaactctcttcgccttgtttctggtgaccaaagtggaatgatcttggatggacagtgtgaaccaattacaagaattttgcaagatgtgatagcaggtt |
22517163 |
T |
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| Q |
403 |
catatatttttgtgtgtgctcatggaagtcgcgacg |
438 |
Q |
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| T |
22517162 |
catatatttttgtgtgtgctcatggaagtcgcgacg |
22517127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 41 - 246
Target Start/End: Complemental strand, 9710559 - 9710354
Alignment:
| Q |
41 |
agtattacaatcagatgataaaaaatcatccacaacttatttcaattgaaacaaaccacaaaggtgggattaatttgaattctaccaacttctctggatt |
140 |
Q |
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||||||| | ||| ||||| |||| | ||||||| |||||| ||||||||||||| ||||||| |||| |||| ||| |||| |||||||| ||||||| |
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| T |
9710559 |
agtattatagtcaaatgatcaaaagttatccacagcttattccaattgaaacaaatcacaaagatgggcttaacctgagttctgccaacttcactggatt |
9710460 |
T |
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| Q |
141 |
ttcaaacatcaaaaacttgtacataactggacaccataatggagccataactttttgggatgcatcaggccccttcttcatcacagttttgcaattaaag |
240 |
Q |
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| T |
9710459 |
ttcaaacattaaaaacttgtacataactggacaccataatggagccataacattttgggatgcatcatgtcccttcttcatcccagttttgcaattaaag |
9710360 |
T |
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| Q |
241 |
cagcag |
246 |
Q |
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|||||| |
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| T |
9710359 |
cagcag |
9710354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 243 - 344
Target Start/End: Complemental strand, 9710040 - 9709941
Alignment:
| Q |
243 |
gcagagtaaaattgatcattctttaagtggtgttcccttgacagtattatctatcctgacatcaactctcttcgccttgtttctggtgaccaaagtggaa |
342 |
Q |
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| T |
9710040 |
gcagagtgaaaatgatcaatctttaagtggtgtaccattgacagaattatattt--tgacatcaagtctcttctcctggtttctggtgaccagagtggaa |
9709943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 382 - 433
Target Start/End: Complemental strand, 399897 - 399846
Alignment:
| Q |
382 |
tgcaagatgtgatagcaggttcatatatttttgtgtgtgctcatggaagtcg |
433 |
Q |
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| T |
399897 |
tgcaagatgtgatagcaggttcatatatttttgtgtgtgctcatggaagtcg |
399846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 382 - 438
Target Start/End: Original strand, 416635 - 416691
Alignment:
| Q |
382 |
tgcaagatgtgatagcaggttcatatatttttgtgtgtgctcatggaagtcgcgacg |
438 |
Q |
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| T |
416635 |
tgcaagacgtgatagcaggttcatatatttttgtgtgtgctcatggaagtcgtgacg |
416691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 382 - 433
Target Start/End: Original strand, 405464 - 405515
Alignment:
| Q |
382 |
tgcaagatgtgatagcaggttcatatatttttgtgtgtgctcatggaagtcg |
433 |
Q |
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| T |
405464 |
tgcaagatgtgatagcaggttcatataattttgtgtgtgctcacggaagtcg |
405515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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