View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9907_5 (Length: 411)
Name: NF9907_5
Description: NF9907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9907_5 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 33 - 392
Target Start/End: Complemental strand, 17075755 - 17075396
Alignment:
| Q |
33 |
gacatcatcaatcacaaccttctcattcccatgcacagccacccaattaacccaatcattgttaactgaccccgacgaggaactaccatccgaaactccc |
132 |
Q |
| |
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||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| ||||| |
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|
| T |
17075755 |
gacatcatcaaacacaaccttctcatttccatgcactgccacccaattaacccaatcattgttaacggaccccgatgacgaactaccatccgaagctccc |
17075656 |
T |
|
| Q |
133 |
gaggaaaccacccttaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatatgtaaaacggtggaacgatctttactag |
232 |
Q |
| |
|
|| |||||||| |||||||||||||||| || ||||| ||||||||||||||| ||||||||||||| || |||||||| | |||||||||||| |||| |
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| T |
17075655 |
gaagaaaccacttttaccgcctttttaaggcgttccgagccttgtaattttctcaatttagattttaagatgtgtaaaactgaggaacgatctttgctag |
17075556 |
T |
|
| Q |
233 |
gcaaccgcgccaccttcttcaaactaatcaccgagtgccgcaagatcccattcactttcttcctcttattaacgatggaactgggttttgcactaggcca |
332 |
Q |
| |
|
||| |||||||||||| |||| ||||||||||||||| ||||| || || ||||||||||||| ||| |||||||||| ||||| || |||| | |||| |
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| T |
17075555 |
gcagccgcgccacctttttcagactaatcaccgagtgtcgcaaaattccgttcactttcttccgcttgttaacgatggtactggattgtgcaatgggccg |
17075456 |
T |
|
| Q |
333 |
caccactttcttaaccttcttccttgccgaagaaataacaccagcgtcaccatgatgatg |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
17075455 |
caccactttcttaaccttcttccttgccgaagaaataacaccagcgtcaccattatgatg |
17075396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 160 - 392
Target Start/End: Complemental strand, 11053702 - 11053470
Alignment:
| Q |
160 |
agacgatccgaaccttgtaattttctcgatttagattttaaaatatgtaaaacggtggaacgatctttactaggcaaccgcgccaccttcttcaaactaa |
259 |
Q |
| |
|
||||| || |||||||||||||| ||||||||||||||||| |||||||||| |||||| |||||||| |||||||||||||||||||| |||||||||| |
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|
| T |
11053702 |
agacggtctgaaccttgtaatttcctcgatttagattttaagatatgtaaaatggtggaccgatctttgctaggcaaccgcgccacctttttcaaactaa |
11053603 |
T |
|
| Q |
260 |
tcaccgagtgccgcaagatcccattcactttcttcctcttattaacgatggaactgggttttgcactaggccacaccactttcttaaccttcttccttgc |
359 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||| || || | | || || || ||| |||||| ||||||||||||||||||||| ||||| |
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|
| T |
11053602 |
tcaccgagtgccgcagaaccccattcactttcttccgattgtttgcacagataccggattgggcaataggccgcaccactttcttaaccttctttcttgc |
11053503 |
T |
|
| Q |
360 |
cgaagaaataacaccagcgtcaccatgatgatg |
392 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |
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|
| T |
11053502 |
cgatgaaataacaccagcgtcaccatgatgatg |
11053470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 34 - 164
Target Start/End: Complemental strand, 11064166 - 11064036
Alignment:
| Q |
34 |
acatcatcaatcacaaccttctcattcccatgcacagccacccaattaacccaatcattgttaactgaccccgacgaggaactaccatccgaaactcccg |
133 |
Q |
| |
|
|||||||||| ||| || ||||||||| ||||||| ||||||||||| ||||||||||| ||||| || ||||||||||||||||| ||||||||| ||| |
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|
| T |
11064166 |
acatcatcaaccactactttctcattctcatgcactgccacccaattgacccaatcattattaaccgatcccgacgaggaactaccttccgaaacttccg |
11064067 |
T |
|
| Q |
134 |
aggaaaccacccttaccgcctttttaagacg |
164 |
Q |
| |
|
||||||||||| | ||| ||||||||||||| |
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|
| T |
11064066 |
aggaaaccaccttaaccacctttttaagacg |
11064036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 34 - 392
Target Start/End: Original strand, 17683905 - 17684263
Alignment:
| Q |
34 |
acatcatcaatcacaaccttctcattcccatgcacagccacccaattaacccaatcattgttaactgaccccgacgaggaactaccatccgaaactcccg |
133 |
Q |
| |
|
|||||||||| | | || ||||||||||||||||| ||||||||||||||||||||||| ||||| |||| ||||||||||||||| ||||||||||||| |
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|
| T |
17683905 |
acatcatcaaccgctactttctcattcccatgcactgccacccaattaacccaatcattattaaccgacctcgacgaggaactaccttccgaaactcccg |
17684004 |
T |
|
| Q |
134 |
aggaaaccacccttaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatatgtaaaacggtggaacgatctttactagg |
233 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| || |||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||| |
|
|
| T |
17684005 |
aggaaaccacctttaccacctttttaagacggtctgaaccttgtaatttcctcgatttagattttaagatatgtaaaacggtggaccgatctttgctagg |
17684104 |
T |
|
| Q |
234 |
caaccgcgccaccttcttcaaactaatcaccgagtgccgcaagatcccattcactttcttcctcttattaacgatggaactgggttttg-cactaggcca |
332 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||| | ||||||||||||||||| || || | | | | || || | | |||||| |
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|
| T |
17684105 |
caactgcgccacctttttcaaactaatcaccgagtgccgcaaaaccccattcactttcttccgtttgtttgc-acaaatatcggattggaaaataggccg |
17684203 |
T |
|
| Q |
333 |
caccactttcttaaccttcttccttgccgaagaaataacaccagcgtcaccatgatgatg |
392 |
Q |
| |
|
|||||||||| | |||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17684204 |
caccactttcctgaccttctttcttgccgatgaaataacaccagcgtcaccatgatgatg |
17684263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 49 - 392
Target Start/End: Original strand, 36159902 - 36160245
Alignment:
| Q |
49 |
accttctcattcccatgcacagccacccaattaacccaatcattgttaactgaccccgacgaggaactaccatccgaaactcccgaggaaaccaccctta |
148 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||| ||||||||||| | || || ||||| ||| ||| ||||||| || ||||| | | |
|
|
| T |
36159902 |
accttctcattcccatgcacaaccacaaaattaacccaatcgttgttaactgaacatgaagaagaacttttatctgaagctcccgaagaccccaccttca |
36160001 |
T |
|
| Q |
149 |
ccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatatgtaaaacggtggaacgatctttactaggcaaccgcgccacctt |
248 |
Q |
| |
|
|||||||||| ||||||||||| || ||||||||||| | ||||||||||| ||| || ||||| || || | ||| || | || |||| ||||| || |
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|
| T |
36160002 |
ccgcctttttcagacgatccgacccatgtaattttctagctttagattttagaatgtgcaaaactgttgatcaatcattggtcggtaaccttgccacttt |
36160101 |
T |
|
| Q |
249 |
cttcaaactaatcaccgagtgccgcaagatcccattcactttcttcctcttattaacgatggaactgggttttgcactaggccacaccactttcttaacc |
348 |
Q |
| |
|
||||||||| ||||||| || |||||||| |||| ||||||||| | || ||||| | | | | || | || | |||| ||||||||| |||| | |
|
|
| T |
36160102 |
tttcaaactattcaccgaatgtcgcaagataccatccactttctttcgtttcttaacattagtgcaagattgtacaattggcctcaccacttttttaagc |
36160201 |
T |
|
| Q |
349 |
ttcttccttgccgaagaaataacaccagcgtcaccatgatgatg |
392 |
Q |
| |
|
|| ||||| | ||| |||||||||||||| |||||||||||||| |
|
|
| T |
36160202 |
tttttcctggacgacgaaataacaccagcatcaccatgatgatg |
36160245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 34 - 392
Target Start/End: Original strand, 26741535 - 26741893
Alignment:
| Q |
34 |
acatcatcaatcacaaccttctcattcccatgcacagccacccaattaacccaatcattgttaactgaccccgacgaggaactaccatccgaaactcccg |
133 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| || ||||||||||||||| |||||| |
|
|
| T |
26741535 |
acatcatcaaccacaaccttctcattcccatgcacttccacccaattaacccaatcgttgttaactgaacccgaggaagaactaccatccgaagctcccg |
26741634 |
T |
|
| Q |
134 |
aggaaaccacccttaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatatgtaaaacggtggaacgatctttactagg |
233 |
Q |
| |
|
| |||||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||||||||||| || |||||||| |||||||||||||| | || |
|
|
| T |
26741635 |
aagaaaccacccttacagccttcttaagacgatccgatccttgtaattttctcgacttagattttaagatgtgtaaaactgtggaacgatctttgcaggg |
26741734 |
T |
|
| Q |
234 |
caaccgcgccaccttcttcaaactaatcaccgagtgccgcaagatcccattcactttcttcctcttattaacgatggaactgggttttgcactaggccac |
333 |
Q |
| |
|
|| ||| ||||||| |||||||||||||||| || ||| |||||| ||||||||||||||| ||| ||||| | || || | || ||| ||||| | |
|
|
| T |
26741735 |
cagccgatccacctttttcaaactaatcaccgggttccgtaagatctcattcactttcttccgcttgttaacaaaggtacatgattgagcaataggctgc |
26741834 |
T |
|
| Q |
334 |
accactttcttaaccttcttccttgccgaagaaataacaccagcgtcaccatgatgatg |
392 |
Q |
| |
|
||||| |||||||||||||||| ||||| |||||||||||||| |||||||||||||| |
|
|
| T |
26741835 |
gccactctcttaaccttcttcctagccgatgaaataacaccagcatcaccatgatgatg |
26741893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 36 - 316
Target Start/End: Complemental strand, 10560002 - 10559722
Alignment:
| Q |
36 |
atcatcaatcacaaccttctcattcccatgcacagccacccaattaacccaatcattgttaactgaccccgacgaggaactaccatccgaaactcccgag |
135 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||| || ||||||||||| ||| ||||||| |
|
|
| T |
10560002 |
atcatcaactacaaccttctcattcccatgcactgccacccaattaacccaatcattgttatctgaacccgaggaagaactaccatctgaagctcccgaa |
10559903 |
T |
|
| Q |
136 |
gaaaccacccttaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatatgtaaaacggtggaacgatctttactaggca |
235 |
Q |
| |
|
||||||||| ||||||||||||| |||||||| || ||||||||||||||||||||||||||||| || |||||||||||||| ||||||| ||||||| |
|
|
| T |
10559902 |
gaaaccacctttaccgcctttttgagacgatctgatccttgtaattttctcgatttagattttaagatgtgtaaaacggtggattgatctttgctaggca |
10559803 |
T |
|
| Q |
236 |
accgcgccaccttcttcaaactaatcaccgagtgccgcaagatcccattcactttcttcctcttattaacgatggaactgg |
316 |
Q |
| |
|
| || ||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||| ||||| |||| ||||| |
|
|
| T |
10559802 |
gctgccccacctttttcaaactaatcaccgagtgccgcagaaacccattcactttcttcctcttgttaacaatggtactgg |
10559722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 321 - 393
Target Start/End: Complemental strand, 10558491 - 10558419
Alignment:
| Q |
321 |
tgcactaggccacaccactttcttaaccttcttccttgccgaagaaataacaccagcgtcaccatgatgatgt |
393 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10558491 |
tgcaataggccgcaccactttcttaaccttctttcttgccgaagaaataacaccagcgtcaccatgatgatgt |
10558419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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