View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9908_2 (Length: 762)

Name: NF9908_2
Description: NF9908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9908_2
NF9908_2
[»] chr3 (2 HSPs)
chr3 (1-747)||(11486921-11487675)
chr3 (513-600)||(5970410-5970497)
[»] chr8 (3 HSPs)
chr8 (1-126)||(18392013-18392139)
chr8 (373-403)||(18392379-18392409)
chr8 (518-583)||(17230569-17230633)
[»] chr1 (4 HSPs)
chr1 (303-410)||(17315636-17315743)
chr1 (478-516)||(17315880-17315918)
chr1 (7-84)||(17315403-17315479)
chr1 (518-600)||(19850868-19850949)
[»] chr5 (1 HSPs)
chr5 (7-124)||(16451540-16451658)


Alignment Details
Target: chr3 (Bit Score: 564; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 1 - 747
Target Start/End: Complemental strand, 11487675 - 11486921
Alignment:
Q  1 aactgaaggtagattcgtccaatggttttctccgtaaatcttaatgatgttcggggagtatccaggccttcatggagagatcctcgacattagccagagc 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||| |    
T  11487675 aactgaaggtagattcgtccaatggttttctccgcaaatcttaatgatgttcagggagtatccaggccttcatggagagatccttgacagtagccagaac 11487576  T
Q  101 atgtcatcctttatttcacacattcaaggcatagagtcatgcaagcaagagtttagttgagtacagcagccatttatccagttcttttacacatacattg 200  Q
    ||||||||||||||||||||||||||  ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||    
T  11487575 atgtcatcctttatttcacacattcagagcacagagtcatgcaagcaagagtttggttgagtacagcagccatttatccagttcttatacacagacattg 11487476  T
Q  201 cagaaccannnnnnncattgatttaaaaaa-tacattga--------------gcttgggctgtaaatgtgagtttgattaataacattatatcacaata 285  Q
    ||||||||       ||||||||||||||| ||||| ||              ||||| ||||||||| |||||||||||||||||||||||||||||||    
T  11487475 cagaaccatttttttcattgatttaaaaaaatacatcgaattttgaatcctacgcttgagctgtaaatatgagtttgattaataacattatatcacaata 11487376  T
Q  286 aaatcattgctatgtggatgaaaaaatggcaagcatatgcgagtttattaacacagttccatttttatgagaaaactgtatagagcttgcaaatgcagaa 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11487375 aaatcattgctatgtggatgaaaaaatggcaagcatatgcgagtttattaacacagttccatttttatgagaaaactgtatagaacttgcaaatgcagaa 11487276  T
Q  386 aagtgatgtgtacctcatgtaaatggtgaaaaataaataatatacaccatatgattgatgttataatactagccaaagaagtcatacacaccagtagcca 485  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11487275 aagtgatgtgtacctcatgtaaatggtgaaaaataaataatatacaccatatgattgatgttataatactagccaaagaattcatacacaccagtagcca 11487176  T
Q  486 taaaatcattggagaaatgagaatggatatagatgcagaaaactaaacaaggtgaaaataattgattttttgtaactaggaacttctatgagatgattac 585  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11487175 taaaatcattggagaaatgagaatgg--atagatgcagaaaactaaacaaggtgaaaataattgattttttgtaactaggaacttctatgagatgattac 11487078  T
Q  586 ttacatgtggttttggtaaatctaacaaatttatttgaatgtgtaaaagtggctttta-ggtggagatgtgtatcaaatgttctatgggtggaccatgat 684  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11487077 ttacatgtggttttggtaaatctaacaaatttatttgaatgtgtaaaagtggcttttagggtggagatgtgtatcaaatgttctatgggtggaccatgat 11486978  T
Q  685 ttagagccacctcacatatgactattannnnnnnccatcctattgcattctcattcgccctat 747  Q
    ||||||||||||||||||||  ||||        |||||||||||||||||||||||||||||    
T  11486977 ttagagccacctcacatatg--tatt----ttttccatcctattgcattctcattcgccctat 11486921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 513 - 600
Target Start/End: Original strand, 5970410 - 5970497
Alignment:
Q  513 tatagatgcagaaaactaaacaaggtgaaaataattgattttttgtaactaggaacttctatgagatga-ttacttacatgtggttttg 600  Q
    |||| |||||||||||| |||||  ||||||| ||||| ||| |||||||||| |||||||| |||||| ||| ||||| |||||||||    
T  5970410 tatatatgcagaaaactgaacaaaatgaaaattattga-tttgtgtaactaggcacttctattagatgatttatttacacgtggttttg 5970497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 18392013 - 18392139
Alignment:
Q  1 aactgaaggtagattcgtccaatggttttctccgtaaatcttaatgatgttcggggagtatccaggccttcatggagagatcctcgacattagccagagc 100  Q
    ||||| ||||| ||||||| |||||  |||||| ||||||||| |||||| |||||| |||||| |||||  | | ||||||||||||| ||||||  ||    
T  18392013 aactggaggtatattcgtcaaatggcattctccataaatcttattgatgtccggggaatatccaagcctttctagggagatcctcgacactagccatggc 18392112  T
Q  101 atgt-catcctttatttcacacattca 126  Q
    |  | ||||||||||||||||||||||    
T  18392113 acatccatcctttatttcacacattca 18392139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 373 - 403
Target Start/End: Original strand, 18392379 - 18392409
Alignment:
Q  373 tgcaaatgcagaaaagtgatgtgtacctcat 403  Q
    |||||||||||||||||||||||||||||||    
T  18392379 tgcaaatgcagaaaagtgatgtgtacctcat 18392409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 518 - 583
Target Start/End: Complemental strand, 17230633 - 17230569
Alignment:
Q  518 atgcagaaaactaaacaaggtgaaaataattgattttttgtaactaggaacttctatgagatgatt 583  Q
    ||||||||||||||||||  || |||| ||||| ||| |||||||||| ||||||||| |||||||    
T  17230633 atgcagaaaactaaacaaaatgcaaattattga-tttgtgtaactaggcacttctatgtgatgatt 17230569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 303 - 410
Target Start/End: Original strand, 17315636 - 17315743
Alignment:
Q  303 atgaaaaaatggcaagcatatgcgagtttattaacacagttccatttttatgagaaaactgtatagagcttgcaaatgcagaaaagtgatgtgtacctca 402  Q
    ||||| ||||||| |||||||| || |||||  ||||||||||||| |||||||||| ||||| | | |||||||||||| ||| || |||||| ||||     
T  17315636 atgaagaaatggccagcatatgtgaatttatatacacagttccattgttatgagaaatctgtagaaaacttgcaaatgcaaaaaggttatgtgtgcctcg 17315735  T
Q  403 tgtaaatg 410  Q
    | ||||||    
T  17315736 tctaaatg 17315743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 478 - 516
Target Start/End: Original strand, 17315880 - 17315918
Alignment:
Q  478 agtagccataaaatcattggagaaatgagaatggatata 516  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  17315880 agtagccataaaatcgttggagaaatgagaatggatata 17315918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 17315403 - 17315479
Alignment:
Q  7 aggtagattcgtccaatggttttctccgtaaatcttaatgatgttcggggagtatccaggccttcatggagagatcct 84  Q
    |||||||||| ||||||||||||||||  |||| || |||||||| ||||| ||||  ||||||||| ||||||||||    
T  17315403 aggtagattcatccaatggttttctccacaaatattgatgatgtttgggga-tatcgtggccttcatagagagatcct 17315479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 518 - 600
Target Start/End: Complemental strand, 19850949 - 19850868
Alignment:
Q  518 atgcagaaaactaaacaaggtgaaaataattgattttttgtaactaggaacttctatgagatgattacttacatgtggttttg 600  Q
    ||||||||||||||||||  || |||| |||||||| | ||||||||| ||||||||| |||||||  ||  |||||||||||    
T  19850949 atgcagaaaactaaacaaaatgcaaattattgatttgt-gtaactaggcacttctatgtgatgatttatttaatgtggttttg 19850868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 124
Target Start/End: Original strand, 16451540 - 16451658
Alignment:
Q  7 aggtagattcgtccaatggttttctccgtaaatcttaatgatgttcggggagtatccaggccttcatggagagatcctcgacattagccagagca-tgtc 105  Q
    ||||| |||||||||||||||||||||  ||||||||||||||||  |||| |||| |  ||||| | |||||||| | |||| ||||||  |||   ||    
T  16451540 aggtacattcgtccaatggttttctccacaaatcttaatgatgtttagggaatatctacaccttcgtcgagagatcattgacaatagccatggcacattc 16451639  T
Q  106 atcctttatttcacacatt 124  Q
    || ||||||||||||||||    
T  16451640 attctttatttcacacatt 16451658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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