View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9908_7 (Length: 313)

Name: NF9908_7
Description: NF9908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9908_7
NF9908_7
[»] chr8 (1 HSPs)
chr8 (17-313)||(3426369-3426665)


Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 17 - 313
Target Start/End: Complemental strand, 3426665 - 3426369
Alignment:
Q  17 taaagtcggtttcacttttgagtttactaaaattcgaattaacaactaagtcaaatcgaaattgatacctgaattgtattgaatctttaacctgtacaat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||  ||||||| |||||||||||||||||||||||||||||    
T  3426665 taaagtcggtttcacttttgagtttactaaaattcgaattaacaactaagtcatattgaaagcgatacctaaattgtattgaatctttaacctgtacaat 3426566  T
Q  117 ttgttcatgttatgcttattcttttgctcattattcatttacaacaacaatgtctttcttttgttctatgaagatgatcttcttttgacatgtattcaaa 216  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3426565 ttgctcatgttatgcttattcttttgctcattattcatttacaacaacaatgtctttcttttgttctatgaagatgatcttcttttgacatgtattcaaa 3426466  T
Q  217 gtgaattcttaaagcagtaaatggaacaactctcaaataggttctcacttaaatatcttggctatcctcattaattcctgagaattgaactcattcc 313  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3426465 gtgaattcttaaagcagtaaatggaacaactgtcaaataggttctcacttaaatatcttggccatcctcattaattcctgagaattgaactcattcc 3426369  T

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