View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9908_low_1 (Length: 279)
Name: NF9908_low_1
Description: NF9908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9908_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 116 - 269
Target Start/End: Original strand, 36163128 - 36163281
Alignment:
| Q |
116 |
aattgaagagctgttgattcttgttgcttccgccttgaagtattgtcaccattccacaaggacaaataacgtacccacctatattcacatgtgtgcccat |
215 |
Q |
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| T |
36163128 |
aattgaagagctgttgattcttgttgcttccgccttgaagtattgtcaccattccacaaggacaaataacgtacccacctatattcacatgtgtgcccat |
36163227 |
T |
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| Q |
216 |
taatcatcacaacaaaacaatatcctccatacacatatactgctcctacctttg |
269 |
Q |
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| T |
36163228 |
taatcatcacaacaaaacaatatcctccatacacatatactgctcctacctttg |
36163281 |
T |
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Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 186 - 267
Target Start/End: Complemental strand, 32409149 - 32409068
Alignment:
| Q |
186 |
gtacccacctatattcacatgtgtgcccattaatcatcacaacaaaacaatatcctccatacacatatactgctcctacctt |
267 |
Q |
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| T |
32409149 |
gtacctacctctattcacatgtgtgctcataaatcattacaacaaaacaatgtcctacatacatataccctgctcctacctt |
32409068 |
T |
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