View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9908_low_2 (Length: 271)
Name: NF9908_low_2
Description: NF9908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9908_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 6 - 256
Target Start/End: Original strand, 41248999 - 41249247
Alignment:
| Q |
6 |
aggagcacagaacaagtccaactgaaacaaaacattataatgttataaagatagatccaactatcatatgtgcagcaccatgcttgttgtggctacctcc |
105 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41248999 |
aggatcacaaaacaagtccaactgaaacaaaacattataatgttataaagatagatccaactatcatatgtgcagcaccatgcttgttgtggctacctcc |
41249098 |
T |
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| Q |
106 |
aaccgtcccaaaaataaccgagcctttgacaaacaatattactatagcacctaaaattgtagctatggtttccaatatctttgcttggcttcttcgactt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41249099 |
aaccgtcccaaaaataaccgagcctttgacaaacaatattactatagcacctaaaattgtagctatggtttccaatatctttgcttggcttcttcgactt |
41249198 |
T |
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| Q |
206 |
cttatatgtttatctcctcgagcctaagcacaaaaaagatatgacattttt |
256 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41249199 |
ct--tatgtttatctcctcgagcctaagcacaaaaaagatatgacattttt |
41249247 |
T |
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