View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9909_low_1 (Length: 413)
Name: NF9909_low_1
Description: NF9909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9909_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 135 - 402
Target Start/End: Original strand, 22813061 - 22813328
Alignment:
| Q |
135 |
tgcagagtcacaatgtcatgtataaatataattgaaggatatacctctagttgttcatgaagacgcctctgaacgtctagctgcagctgaagtgcctctc |
234 |
Q |
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| T |
22813061 |
tgcagagtcacaaaataatgtataaaggaaattaaaggatatacctctagttgttcatgaagacgcctctgaacgtctagctgcagctgaagtgcctctc |
22813160 |
T |
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| Q |
235 |
taatttgcaaaccactgcaaattacgaaaagaaatatagtttgttacaatatgaaaataagcaagaaatgattgcactggaattatagaacataacaatc |
334 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22813161 |
taatttgcaaaccactgcaaattacgaaaagaaatatagtttgttacaatatgaaaataagcaagaaatgattgcactggaattatagaacataacaatc |
22813260 |
T |
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| Q |
335 |
ggaaaaatatgtaagtagcattacgatttggcatcaagattcacattctccacgtgagttcttctctc |
402 |
Q |
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| T |
22813261 |
ggaaaaataagtaagtagcattacgatttcgcatcaaggttcacattctctacatgagttcttttctc |
22813328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 22812619 - 22812686
Alignment:
| Q |
18 |
tatgaatgcgatctggactgcagcatcgaggtattttt-gtctcagagacagcggcgtggccataatt |
84 |
Q |
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| T |
22812619 |
tatggatgcgatctggactgcaacatcgaggttttttttgtcttagagacagcggcgtggccataatt |
22812686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 384
Target Start/End: Original strand, 22810129 - 22810166
Alignment:
| Q |
347 |
aagtagcattacgatttggcatcaagattcacattctc |
384 |
Q |
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| T |
22810129 |
aagtagcattacgatttggcatcaagatgcatattctc |
22810166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 178; Significance: 7e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 135 - 402
Target Start/End: Original strand, 40382572 - 40382843
Alignment:
| Q |
135 |
tgcagagtcacaatgtcatgtataaatataattgaaggatatacctctagttgttcatgaagacgcctctgaacgtctagctgcagctgaagtgcctctc |
234 |
Q |
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||||||||||||| ||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
40382572 |
tgcagagtcacaaagtcatgtataaatgaaattgaaggatatacctcaagttgatcatgaagacgcctctgaacatctagctgcagctgaagtgcctctt |
40382671 |
T |
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| Q |
235 |
taatttgcaaaccactgcaaattacgaaaagaaatata--gtttgttacaatatgaaaataagcaagaaatgattgcactgga--attatagaacataac |
330 |
Q |
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|||| |||||||| |||||||||| |||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40382672 |
taatctgcaaacccctgcaaattataaaaacaaatatagtgtttgttgcaatatgaaaataagcaagaaatgattgcactggaatattatagaacataac |
40382771 |
T |
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| Q |
331 |
aatcggaaaaatatgtaagtagcattacgatttggcatcaagattcacattctccacgtgagttcttctctc |
402 |
Q |
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| T |
40382772 |
aatacgaaaaataagtaagtagcattacaatttggcatcaagattcacattctccacgtgagttcttttctc |
40382843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 276
Target Start/End: Original strand, 40381326 - 40381440
Alignment:
| Q |
164 |
aattgaaggatatacctctagttgttcatgaagacgcctctg-aacgtctagctgcagctgaagtgcctctctaatttgcaaaccactgcaaattacgaa |
262 |
Q |
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|||||||||||||||||||||||||||||||||| | || | ||| | ||| || | |||||||| ||||||||||||||| | || |||||| ||| |
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| T |
40381326 |
aattgaaggatatacctctagttgttcatgaagaaggcttggaaacatgtagttgaaactgaagtggctctctaatttgcaagtaattgaaaattaagaa |
40381425 |
T |
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| Q |
263 |
-aagaaatatagttt |
276 |
Q |
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|||||||||||||| |
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| T |
40381426 |
caagaaatatagttt |
40381440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 256
Target Start/End: Original strand, 36940880 - 36940967
Alignment:
| Q |
169 |
aaggatatacctctagttgttcatgaagacgcctctgaacgtctagctgcagctgaagtgcctctctaatttgcaaaccactgcaaat |
256 |
Q |
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|||||||||||||||||||||||||||||||||| || | |||| || || ||||||||||| | ||||| || ||||||||||| |
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| T |
36940880 |
aaggatatacctctagttgttcatgaagacgcctttgtgcatctaattgaagttgaagtgcctccttgatttgaaagccactgcaaat |
36940967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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