View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9909_low_3 (Length: 349)
Name: NF9909_low_3
Description: NF9909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9909_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-169; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 8 - 335
Target Start/End: Complemental strand, 1903320 - 1902993
Alignment:
| Q |
8 |
accgatacttcacattgaaggcgtgttcagtgttcaacaggcattagtgtttggcacgtgctggtgtcagacatagacatgcgtgttacatccaatcttt |
107 |
Q |
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| T |
1903320 |
accgatacttcacattgaaggcgtgttcagtgttcaacaggcattagtgtttggcacgtgctggtgtcagacatagacatgcatgttacatccaatcttt |
1903221 |
T |
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| Q |
108 |
tccatttcatcaaattaatattggcgtctatgtcctagtgtcagtgttatatctggtgttcgtgactgtgtcaatattcatatactttatggactttaat |
207 |
Q |
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| T |
1903220 |
tccatttcatcaaattattattgatgtctatgtcctagtgtcagtgttatatatggtgttcgtgactgtgtcaatattcatatactttatggactttaat |
1903121 |
T |
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| Q |
208 |
ttttaatgtataatatctctcattttgcataatactaaccctaccctacctaccagtaaaatgtaccatagtgaagacagaaaatagtcaaatattagga |
307 |
Q |
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| T |
1903120 |
ttttaatgtataatatctctcattttgcataatactaaccctaccctacctaccagtaaaatgtaccatagtgaagacagaaaatagtcaaatattagga |
1903021 |
T |
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| Q |
308 |
gaatgccagcaatgatccaacttgaatc |
335 |
Q |
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| T |
1903020 |
gaatgccagcaatggcccaacttgaatc |
1902993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 8 - 335
Target Start/End: Complemental strand, 1907553 - 1907226
Alignment:
| Q |
8 |
accgatacttcacattgaaggcgtgttcagtgttcaacaggcattagtgtttggcacgtgctggtgtcagacatagacatgcgtgttacatccaatcttt |
107 |
Q |
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| T |
1907553 |
accgatacttcacattgaaggcgtgttcagtgttcaacaggcattagtgtttggcacgtgctggtgtcagacatagacatgcatgttacatccaatcttt |
1907454 |
T |
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| Q |
108 |
tccatttcatcaaattaatattggcgtctatgtcctagtgtcagtgttatatctggtgttcgtgactgtgtcaatattcatatactttatggactttaat |
207 |
Q |
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| T |
1907453 |
tccatttcatcaaattattattgatgtctatgtcctagtgtcagtgttatatatggtgttcgtgactgtgtcaatattcatatactttatggactttaat |
1907354 |
T |
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| Q |
208 |
ttttaatgtataatatctctcattttgcataatactaaccctaccctacctaccagtaaaatgtaccatagtgaagacagaaaatagtcaaatattagga |
307 |
Q |
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| T |
1907353 |
ttttaatgtataatatctctcattttgcataatactaaccctaccctacctaccagtaaaatgtaccatagtgaagacagaaaatagtcaaatattagga |
1907254 |
T |
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| Q |
308 |
gaatgccagcaatgatccaacttgaatc |
335 |
Q |
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| T |
1907253 |
gaatgccagcaatggcccaacttgaatc |
1907226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 223 - 322
Target Start/End: Complemental strand, 1897615 - 1897516
Alignment:
| Q |
223 |
tctctcattttgcataatactaaccctaccctacctaccagtaaaatgtaccatagtgaagacagaaaatagtcaaatattaggagaatgccagcaatga |
322 |
Q |
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| T |
1897615 |
tctctcattttgcataatattaatcctaccctacttaccactaaaatgtaccatagtgaagacagaaaatagtcaactatcaggagaatgccagcaatga |
1897516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 256 - 335
Target Start/End: Complemental strand, 1886375 - 1886296
Alignment:
| Q |
256 |
cctaccagtaaaatgtaccatagtgaagacagaaaatagtcaaatattaggagaatgccagcaatgatccaacttgaatc |
335 |
Q |
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| T |
1886375 |
cctaccagtaaaatgtaccatagtgaaaacataagatattcaactgttagaagaatgccagcaatgacccaacttgaatc |
1886296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 114
Target Start/End: Complemental strand, 1897979 - 1897876
Alignment:
| Q |
11 |
gatacttcacattgaaggcgtgttcagtgttcaacaggcattagtgtttggcacgtgctggtgtcagacatagacatgcgtgttacatccaatcttttcc |
110 |
Q |
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| T |
1897979 |
gatacttcatattgaaaacgtgttcagtgtccaacatgtatcgatgtctggcacgtgctggtgtcggacatagacatgcatgttaaattcaatcatttcc |
1897880 |
T |
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| Q |
111 |
attt |
114 |
Q |
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|||| |
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| T |
1897879 |
attt |
1897876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 335
Target Start/End: Complemental strand, 1912964 - 1912885
Alignment:
| Q |
256 |
cctaccagtaaaatgtaccatagtgaagacagaaaatagtcaaatattaggagaatgccagcaatgatccaacttgaatc |
335 |
Q |
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|||||| |||||||||||||||||||| |||||||||||||| | | || ||||| ||||||||| |||||||||||| |
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| T |
1912964 |
cctacctgtaaaatgtaccatagtgaaaccagaaaatagtcaattgtcagcagaataccagcaatggcccaacttgaatc |
1912885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 1897676 - 1897627
Alignment:
| Q |
133 |
gtctatgtcctagtgtcagtgttatatctggtgttcgtgactgtgtcaat |
182 |
Q |
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||||| || ||||||||||| |||| |||||||||||||||||||||||| |
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| T |
1897676 |
gtctacgtgctagtgtcagtattatgtctggtgttcgtgactgtgtcaat |
1897627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 252
Target Start/End: Complemental strand, 1892189 - 1892137
Alignment:
| Q |
200 |
actttaatttttaatgtataatatctctcattttgcataatactaaccctacc |
252 |
Q |
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|||| |||| |||| |||||| ||||||||||||||||||||||| |||||| |
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| T |
1892189 |
acttcaattcttaaagtataacgtctctcattttgcataatactaatcctacc |
1892137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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