View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9909_low_5 (Length: 265)
Name: NF9909_low_5
Description: NF9909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9909_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 145 - 253
Target Start/End: Complemental strand, 6753129 - 6753021
Alignment:
| Q |
145 |
aaatagttatctataatctcaatatcatatgtgcaattttgagattttaatatccatatccctccagagtgtccacgagcttcagaaattgcacaatcct |
244 |
Q |
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| T |
6753129 |
aaatagttatctataatctcaatatcatatgtgcaattttgagattttaatatccatatccctccagagtgtccacgagcttcagaaattgcacaatcct |
6753030 |
T |
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| Q |
245 |
catagccta |
253 |
Q |
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| T |
6753029 |
catagccta |
6753021 |
T |
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Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 145 - 253
Target Start/End: Original strand, 1811405 - 1811513
Alignment:
| Q |
145 |
aaatagttatctataatctcaatatcatatgtgcaattttgagattttaatatccatatccctccagagtgtccacgagcttcagaaattgcacaatcct |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
1811405 |
aaatagttatctataatctcaatatcatatgtgcaattttgagattttaatatccatatacctccagagtgtccacgagcttcagaaattgcacaattct |
1811504 |
T |
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| Q |
245 |
catagccta |
253 |
Q |
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| T |
1811505 |
catagccta |
1811513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 1028266 - 1028341
Alignment:
| Q |
20 |
gatatcaacggtgttatcatcaccatcaccaccattgaatccggtacgacttgcataatagataggacagaacaga |
95 |
Q |
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| T |
1028266 |
gatatgaacggtggtatcatcaccatcaccaccattgaatccggtacaacttgcataatagataggacagaacaga |
1028341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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