View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9910_high_1 (Length: 613)

Name: NF9910_high_1
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9910_high_1
NF9910_high_1
[»] chr7 (2 HSPs)
chr7 (1-428)||(31652039-31652466)
chr7 (434-602)||(31652509-31652677)
[»] chr6 (2 HSPs)
chr6 (52-398)||(218776-219128)
chr6 (488-567)||(218568-218647)
[»] chr1 (1 HSPs)
chr1 (253-311)||(49630135-49630193)


Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 31652039 - 31652466
Alignment:
Q  1 ctctcttctaaacccttgtttgaaagctcttttcctatatcttgatataaagtacctccacatgccacatttaggagttgtgaccctctacaaattccca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31652039 ctctcttctaaacccttgtttgaaagctcttttcctatatcttgatataaagtacctccacatgccacatttaggagttgtgaccctctacaaattccca 31652138  T
Q  101 agtaagggatatttctttcaagacaaagtttggctagtgctaattcaattgaatctttttctttgtcaattgatgtgtcactcacatgtagtcttcttat 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31652139 agtaaggaatatttctttcaagacaaagtttggctagtgctaattcaattgaatctttttctttgtcaattgatgtgtcactcacatgtagtcttcttat 31652238  T
Q  201 ttcttctaattcctcttgagaaagacatgatgtgtcttcctcgtaccatgatggatcaatgtcttctccttcacatagaagcacaccatggattggttca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31652239 ttcttctaattcctcttgagaaagacatgatgtgtcttcctcgtaccatgatggatcaatgtcttctccttcacatagaagcacaccatggattggttca 31652338  T
Q  301 aagctatctaacagcatgtggaccccggaaacgcgtggaactatgacgggtaccgcgccataaccgactataagatcaaggtgatattcacctaaaaaca 400  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31652339 aagctatctaacaacatgtggaccccggaaacacgtggaactatgacgggtaccgcgccataaccgactataagatcaaggtgatattcacctaaaaaca 31652438  T
Q  401 ataatcatgtaatagttaataacaagat 428  Q
    ||||||||||||||||||||||||||||    
T  31652439 ataatcatgtaatagttaataacaagat 31652466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 434 - 602
Target Start/End: Original strand, 31652509 - 31652677
Alignment:
Q  434 aaaattcatattgaatgattgataaaagatggtaaacaaatacatgagaaatgaaacttaccaacaaaatcaacgaacttgttcttgcgaagggttcgtc 533  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31652509 aaaattcatattgaatgattgataaaagatggtaaacaaatacatgagaaatgaaacttaccaacaaaatcaacgaacttgttcttgcgaagggttcgtc 31652608  T
Q  534 tagaaactattagaacacgagggagaatgccagataggtcagaagacattgtacgtgattgaatttgat 602  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31652609 tagaaactattagaacacgagggagaatgccagataggtcagaagacattgtacgtgattgaatttgat 31652677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 6e-57; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 52 - 398
Target Start/End: Complemental strand, 219128 - 218776
Alignment:
Q  52 gtacctccacatgccacatttaggagttgtgaccctctacaaattcccaagtaagggatatttctttcaagacaaagtttggctagtgctaattcaattg 151  Q
    |||||||||||||| ||||| |||| |||||| |||||||||||||| |||||||| || ||||||||||||||||| || ||||    |||||||||||    
T  219128 gtacctccacatgcaacattaaggacttgtgaacctctacaaattcctaagtaaggaatgtttctttcaagacaaagctttgctaagattaattcaattg 219029  T
Q  152 aatctttttctttgtcaattgatgtgtcactcacatgtagtcttcttatttcttctaattcctcttgagaaaga---catgatgtgt---cttcctcgta 245  Q
    |||||||||||||||||||   |||||||||   ||| ||  || | ||||||||||| || || || ||||||   |||| |||||   |||  |||||    
T  219028 aatctttttctttgtcaatgtttgtgtcacttgaatgaagctttttgatttcttctaactcttcatgtgaaagattacatgttgtgttatcttgttcgta 218929  T
Q  246 ccatgatggatcaatgtcttctccttcacatagaagcacaccatggattggttcaaagctatctaacagcatgtggaccccggaaacgcgtggaactatg 345  Q
    |||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||| | ||||| |||||| |  || ||||| ||||| || ||     
T  218928 ccatgaaggatctatgtcttctccttcacatagaagaacaccatgaattggttcaaagctctttaacaacatgtgtatacctgaaacacgtggtacaatc 218829  T
Q  346 acgggtaccgcgccataaccgactataagatcaaggtgatattcacctaaaaa 398  Q
    || |||||||| ||||   | ||||||||||||||||||||||||||| ||||    
T  218828 acaggtaccgcaccatttgctactataagatcaaggtgatattcacctgaaaa 218776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 488 - 567
Target Start/End: Complemental strand, 218647 - 218568
Alignment:
Q  488 aacttaccaacaaaatcaacgaacttgttcttgcgaagggttcgtctagaaactattagaacacgagggagaatgccaga 567  Q
    |||||||| || ||||| |||||||||||||| |||||||||||||||||||| ||||||||| |||| |||||| ||||    
T  218647 aacttaccgacgaaatcgacgaacttgttcttacgaagggttcgtctagaaacgattagaacatgaggaagaatgacaga 218568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 49630193 - 49630135
Alignment:
Q  253 ggatcaatgtcttctccttcacatagaagcacaccatggattggttcaaagctatctaa 311  Q
    ||||||||||| || |||||||| ||||| || ||||||||||| ||||||||||||||    
T  49630193 ggatcaatgtcctcaccttcacaaagaagaactccatggattggctcaaagctatctaa 49630135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University