View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9910_high_11 (Length: 332)

Name: NF9910_high_11
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9910_high_11
NF9910_high_11
[»] chr8 (1 HSPs)
chr8 (19-316)||(16377366-16377663)


Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 316
Target Start/End: Original strand, 16377366 - 16377663
Alignment:
Q  19 cacagatttagagagagaaaacttttaccaaacgaaatgaggataattgtgacatagaaaaatcatatagtacatgcataactcaaattttattagtttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16377366 cacagatttagagagagaaaacttttaccaaacgaaatgaggataattgtgacatagaaaaatcatatagtacatgcataactcaaattttattagtttc 16377465  T
Q  119 aataaatcataagttaaaggcttaacttgatgtctctgtttaatgtttactccatttgtgaaattggtaaagatgcagctggaattgctggtactacatt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16377466 aataaatcataagttaaaggcttaacttgatgtctctgtttaatgcttactccatttgtgaaattggtaaagatgcagctggaattgctggtactacatt 16377565  T
Q  219 ttcttcctcaaattttcagtgattttattacatttaacattttaaacttatctttatcttgatctcaattcttccttgtttatttgtaggtaatatct 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16377566 ttcttcctcaaattttcagtgattttattacatttaacattttaaacttatctttatcttgatctcaattcttccttgtttatttgtaggtaatatct 16377663  T

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