View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9910_high_14 (Length: 315)
Name: NF9910_high_14
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9910_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 38278322 - 38278606
Alignment:
| Q |
18 |
agataagtactgtgtctgtatccctcaaaagaaaagaaaaagagtactttgtatgtagttagtccagtacttgctatatatggtgcactatagatatatg |
117 |
Q |
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| T |
38278322 |
agataagtactgtgtctgtatccctcaaaagaaaagaaaaagagtactttgtatgtagttagtccagtacttgctatatatggtgcactatagatatatg |
38278421 |
T |
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| Q |
118 |
gtaccctatcaaatagtgtcttatacgccatatttgaccccatctctcatatgctactattaattaaaatcggttgcaatgcccataataaaattataat |
217 |
Q |
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| T |
38278422 |
gtaccctatcaaatagtgtcttatacgccatatttgaccccatctctcatatgctactattaattaaaatcggttgcaatgcccataataaaattatagt |
38278521 |
T |
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| Q |
218 |
cgtgtgatttttcttgtttaaacggcaaacttgttacactagccnnnnnnnnnncggcaaacttgttatgttactattttctccta |
303 |
Q |
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| T |
38278522 |
tgtgtgatttttcttgtttaaacggcaaacttgttacactag-caaaaaaaaaacggcaaacttgttatgttactattttctccta |
38278606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 65 - 205
Target Start/End: Original strand, 38279346 - 38279489
Alignment:
| Q |
65 |
tttgtatgtagttagtccagtacttgctatatatggtgcactatagatatatggtaccctatcaaata-gtgtc-ttatacgccatatttgaccccatct |
162 |
Q |
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|||| ||||||||||| |||||||||||||||||||||| |||| || |||||| |||||||||||| | || |||||||||| |||||||||||||| |
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| T |
38279346 |
tttggatgtagttagttcagtacttgctatatatggtgccctatcaatctatggtgccctatcaaatatctttctttatacgccaaatttgaccccatct |
38279445 |
T |
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| Q |
163 |
ctcatatgctactattaattaaa-atcggttgcaatgcccataa |
205 |
Q |
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| T |
38279446 |
ctcatatgctacaattagttaaagatcggttgcaatgcccataa |
38279489 |
T |
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