View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9910_high_17 (Length: 298)
Name: NF9910_high_17
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9910_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 937289 - 937007
Alignment:
| Q |
1 |
aagattaatagtttgcacatatgcaacaccagttggatcactagttgataacaaaacaatatcacaaggaattgtttcattcgttttgatttttacaatc |
100 |
Q |
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| T |
937289 |
aagattaatagtttgcacatatgcaacaccagttggatcactagttgataacaaaacaatatcacaaggaattgtttcatttgttttgatttttacaatc |
937190 |
T |
|
| Q |
101 |
tcaccaacacgaatatccttccatttcttctcaatgaaactaccgtcattcatcaaaattgttgctaacctgttattctcaactttatctgaattgtgtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
937189 |
tcaccaacacgaatatccttccatttcttctcaatgaaactaccgtcattcatcaaaattgttgctaacctgttattctcaactttatctgaattgtgtc |
937090 |
T |
|
| Q |
201 |
tcctccaatcctcaaaagcatctttcacaccagtaacaaacagaacaaaagccaacggtagaatcgaaacatatcttccaaat |
283 |
Q |
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| T |
937089 |
tcctccaatcttcaaaagcatctttcacaccagtaacaaacagaacaaaagccaacggtagaatcgaaacatatcttccaaat |
937007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 2 - 252
Target Start/End: Complemental strand, 16941766 - 16941519
Alignment:
| Q |
2 |
agattaatagtttgcacatatgcaacaccagttggatcactagttgataacaaaacaatatcacaaggaattgtttcattcgttttgatttttacaatct |
101 |
Q |
| |
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||||||| |||||| || || ||||||||||| |||||||| || || |||||||||| |||||||||||| | |||||| | |||||||| | |||| |
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| T |
16941766 |
agattaagagtttgaacgtaagcaacaccagtaggatcactcgtcgacaacaaaacaaaatcacaaggaatcggttcatttgcattgattttaatgatct |
16941667 |
T |
|
| Q |
102 |
caccaacacgaatatccttccatttcttctcaatgaaactaccgtcattcatcaaaattgttgctaacctgttattctcaactttatctgaattgtgtct |
201 |
Q |
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||||||| | |||||| ||||||||||||||||||||| || |||| | ||||| | ||||||| |||||||||||||||||||| | ||||| |
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| T |
16941666 |
caccaactctaatatctttccatttcttctcaatgaaatgac---cattaaccaaaaccaatcctaacctattattctcaactttatctgatctatgtct |
16941570 |
T |
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| Q |
202 |
cctccaatcctcaaaagcatctttcacaccagtaacaaacagaacaaaagc |
252 |
Q |
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||||||||||||| | |||||||||||| ||||||||| ||||||||||| |
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| T |
16941569 |
cctccaatcctcatatgcatctttcacagcagtaacaagaagaacaaaagc |
16941519 |
T |
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