View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9910_high_20 (Length: 289)
Name: NF9910_high_20
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9910_high_20 |
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| [»] chr1 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 4355570 - 4355858
Alignment:
| Q |
1 |
ttagattgctcttcagatcattacaaagtgtttctttttgaaaacccaatggaatggtcatcaaaaaattgctatacatgtcgtgtttatcatgaaaagg |
100 |
Q |
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||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4355570 |
ttagatttctcttcagatgattacaaggtgtttctttttgaaaacccaatggaatggtcatcaataaattgctatacatgtcgtgtttatcatgaaaagg |
4355669 |
T |
|
| Q |
101 |
aaggtgtgtggaaaacaatggataatggtttccttgctggtggaagaaacatgaacttcgacatgaacgtgtttcacaacaaagccattcatgttatctc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4355670 |
aaggtgtgtggaaaacaatggataatggtttccttgctggtggaagaaacatgaacttcgacatgaacgtgtttcacaacaaagccattaatgttatctc |
4355769 |
T |
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| Q |
201 |
agattgttctcattattttgcaaaacctagccctttttacaagccatacataatgtcttataatctcgagaatggaaactcaacaatgc |
289 |
Q |
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| T |
4355770 |
agattgttctcattattttgcaaaacctagccctttttacaagccatacataatgtcttatcatctcgagaatggaaactcaacaatgc |
4355858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 4675342 - 4675054
Alignment:
| Q |
1 |
ttagattgctcttcagatcattacaaagtgtttctttttgaaaacccaatggaatggtcatcaaaaaattgctatacatgtcgtgtttatcatgaaaagg |
100 |
Q |
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||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4675342 |
ttagatttctcttcagatgattacaaggtgtttctttttgaaaacccaatggaatggtcatcaataaattgctatacatgtcgtgtttatcatgaaaagg |
4675243 |
T |
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| Q |
101 |
aaggtgtgtggaaaacaatggataatggtttccttgctggtggaagaaacatgaacttcgacatgaacgtgtttcacaacaaagccattcatgttatctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
4675242 |
aaggtgtgtggaaaacaatggataatggtttccttgctggtggaagaaacatgaacttcgacatgaacttgtttcacaacaaagccatttatgttatctc |
4675143 |
T |
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| Q |
201 |
agattgttctcattattttgcaaaacctagccctttttacaagccatacataatgtcttataatctcgagaatggaaactcaacaatgc |
289 |
Q |
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| T |
4675142 |
agattgttctcattattttgcaaaacctagccctttttacaagccatacataatgtcttatcatctcgagaatggaaactcaacaatgc |
4675054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 38249157 - 38249442
Alignment:
| Q |
1 |
ttagattgctcttcagatcattacaaagtgtttctttttgaaaacccaatggaatggtcatcaaaaaattgctatacatgtcgtgtttatcatgaaaagg |
100 |
Q |
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||||||||||||| |||| | ||||| ||||||||||||||||| ||| ||||||||| | || ||| ||||||||| ||||||| ||| |||| |
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| T |
38249157 |
ttagattgctctttagatgactacaagttgtttctttttgaaaacacaagtgaatggtcacc---aacttgttatacatgtagtgtttaccatagcaagg |
38249253 |
T |
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| Q |
101 |
aaggtgtgtggaaaacaatggataatgg-tttccttgctggtggaagaaacatgaacttcgacatgaacgtgtttcacaacaaagccattcatgttatct |
199 |
Q |
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|||||||||||| ||||||||| | ||| ||| | || |||||| |||||||||| || |||||| ||||||||||| || | ||||| |||||| |
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| T |
38249254 |
aaggtgtgtggacaacaatggaaagtggtttttcatg-tggtggtcgaaacatgaaatttgacatgcctgtgtttcacaaaggaggccttcattttatct |
38249352 |
T |
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| Q |
200 |
cagattgttctcattattttgcaaaacctagccctttttacaagccatacataatgtcttataatctcgagaatggaaactcaacaatgc |
289 |
Q |
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||||| | || ||| ||||||||| |||| || ||||| |||||||| ||||||||||||||| | ||||| |||| |||||| |||| |
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| T |
38249353 |
cagatagcgatccttactttgcaaaatctagtccattttataagccatatataatgtcttataatatagagaacggaatctcaactatgc |
38249442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 277
Target Start/End: Original strand, 38254458 - 38254547
Alignment:
| Q |
188 |
ttcatgttatctcagattgttctcattattttgcaaaacctagccctttttacaagccatacataatgtcttataatctcgagaatggaa |
277 |
Q |
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||||| ||||||||||||| || ||| |||||| | |||| |||||||| |||||||| ||||||||||||||||| |||||||||| |
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| T |
38254458 |
ttcattttatctcagattgcgcttcttacattgcaagatctagtcctttttataagccatatataatgtcttataatctagagaatggaa |
38254547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 188 - 289
Target Start/End: Original strand, 20656984 - 20657085
Alignment:
| Q |
188 |
ttcatgttatctcagattgttctcattattttgcaaaacctagccctttttacaagccatacataatgtcttataatctcgagaatggaaactcaacaat |
287 |
Q |
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||||| ||||||||||||| || ||| ||||||||| |||| |||||||| |||||||| ||||||||||||||||| |||||||||| |||||| || |
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| T |
20656984 |
ttcattttatctcagattgcacttcttactttgcaaaatctaggcctttttataagccatatataatgtcttataatctagagaatggaatctcaactat |
20657083 |
T |
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| Q |
288 |
gc |
289 |
Q |
| |
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|| |
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| T |
20657084 |
gc |
20657085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 188 - 289
Target Start/End: Original strand, 12036669 - 12036770
Alignment:
| Q |
188 |
ttcatgttatctcagattgttctcattattttgcaaaacctagccctttttacaagccatacataatgtcttataatctcgagaatggaaactcaacaat |
287 |
Q |
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||||| |||||||||||||| | ||| ||||||||| |||| |||||||| |||||||| | ||||||||||||||| |||||||||| |||||| || |
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| T |
12036669 |
ttcattttatctcagattgtgattcttactttgcaaaatctagtcctttttataagccatatacaatgtcttataatctagagaatggaatctcaaccat |
12036768 |
T |
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| Q |
288 |
gc |
289 |
Q |
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|| |
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| T |
12036769 |
gc |
12036770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 289
Target Start/End: Complemental strand, 12036055 - 12035954
Alignment:
| Q |
188 |
ttcatgttatctcagattgttctcattattttgcaaaacctagccctttttacaagccatacataatgtcttataatctcgagaatggaaactcaacaat |
287 |
Q |
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||||| ||||||||||||| | ||| ||||||||| |||| |||||||| |||| ||| ||||||||||||||||| ||||||| || |||||| || |
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| T |
12036055 |
ttcattttatctcagattgcgcctcttactttgcaaaatctagtcctttttataagctatatataatgtcttataatctagagaatgaaatctcaactat |
12035956 |
T |
|
| Q |
288 |
gc |
289 |
Q |
| |
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|| |
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| T |
12035955 |
gc |
12035954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 20656105 - 20656048
Alignment:
| Q |
217 |
tttgcaaaacctagccctttttacaagccatacataatgtcttataatctcgagaatg |
274 |
Q |
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||||||||| |||| |||||||| |||||||| |||||||||||||||| ||||||| |
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| T |
20656105 |
tttgcaaaatctagtcctttttataagccatatgtaatgtcttataatctagagaatg |
20656048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 188 - 277
Target Start/End: Original strand, 22177405 - 22177494
Alignment:
| Q |
188 |
ttcatgttatctcagattgttctcattattttgcaaaacctagccctttttacaagccatacataatgtcttataatctcgagaatggaa |
277 |
Q |
| |
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||||| ||||||||||||| || ||| ||||||||| | || |||||||| |||||||| ||||||||||||||||| |||||||||| |
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| T |
22177405 |
ttcattttatctcagattgcgcttcttactttgcaaaatccagtcctttttataagccatatataatgtcttataatctagagaatggaa |
22177494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 277
Target Start/End: Original strand, 22169130 - 22169219
Alignment:
| Q |
188 |
ttcatgttatctcagattgttctcattattttgcaaaacctagccctttttacaagccatacataatgtcttataatctcgagaatggaa |
277 |
Q |
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||||| ||||||||||||| || ||| | ||||||| | || |||||||| |||||||| ||||||||||||||||| |||||||||| |
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| T |
22169130 |
ttcattttatctcagattgcgcttcttactatgcaaaatccagtcctttttataagccatatataatgtcttataatctagagaatggaa |
22169219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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