View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9910_high_28 (Length: 253)
Name: NF9910_high_28
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9910_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 23 - 234
Target Start/End: Complemental strand, 9909271 - 9909060
Alignment:
| Q |
23 |
gatgggttttattcaacttttggaagtggcttcaatgccagttattcaagtcttacttattagtgcattgggagctttcatggctactcagtatttcaac |
122 |
Q |
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|||||||||| | |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9909271 |
gatgggttttctacaacttttggaagtggcttccatgccagttattcaagtcctacttattagtgcattgggagctttcatggctactcagtatttcaac |
9909172 |
T |
|
| Q |
123 |
aatcttctttcaccagattttaggaaatccttgaacaaggtaacggattcaagctagattaaatatattaatcaatttaaataaatatagggtaacgctt |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9909171 |
aatcttctttcaccagattttaggaaatccttgaacaaggtaacggattcaagctagattaaatatattaatcaatttaaataaatatagggtaaagctt |
9909072 |
T |
|
| Q |
223 |
atatacgtacat |
234 |
Q |
| |
|
|||||||||||| |
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|
| T |
9909071 |
atatacgtacat |
9909060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 23 - 205
Target Start/End: Original strand, 9863094 - 9863276
Alignment:
| Q |
23 |
gatgggttttattcaacttttggaagtggcttcaatgccagttattcaagtcttacttattagtgcattgggagctttcatggctactcagtatttcaac |
122 |
Q |
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|||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9863094 |
gatgggttttatacaacttttggaagtggcttccatgccagttattcaagtcctacttattagtgcattgggagctttcatggctactcagtatttcaac |
9863193 |
T |
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| Q |
123 |
aatcttctttcaccagattttaggaaatccttgaacaaggtaacggattcaagctagattaaatatattaatcaatttaaata |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
9863194 |
aatcttctttcaccagattttaggaaatccttgaacaaggtaagggattcaagttagattaaatatattaatcaatttaaata |
9863276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 9867557 - 9867370
Alignment:
| Q |
18 |
gcaaggatgggttttattcaacttttggaagtggcttcaatgccagttattcaagtcttacttattagtgcattgggagctttcatggctactcagtatt |
117 |
Q |
| |
|
|||| |||||||||| | |||||||||||||||||| | |||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||| |
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| T |
9867557 |
gcaaagatgggttttgtacaacttttggaagtggctactatgccagttattcaagtcttgcttgttagtgcattgggagcttttatggctactcagtatt |
9867458 |
T |
|
| Q |
118 |
tcaacaatcttctttcaccagattttaggaaatccttgaacaaggtaacggattcaagctagattaaatatattaatcaatttaaata |
205 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||| |
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| T |
9867457 |
tcaacaatcttctttcaccagattttaggaaatccttgaacaaggtatgtgattcaagataaattaaatatattaatcaatttaaata |
9867370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 13 - 211
Target Start/End: Complemental strand, 9878959 - 9878758
Alignment:
| Q |
13 |
caaaggcaaggatgggttttattcaacttttggaagtggcttcaatgccagttattcaagtcttacttattagtgcattgggagctttcatggctactca |
112 |
Q |
| |
|
|||| |||| |||||||||| | |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||| |
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| T |
9878959 |
caaaagcaaagatgggttttgtacaacttttggaagtggcttctatgccagttattcaagtcttacttgttagtgcattgggggcttttatggctactca |
9878860 |
T |
|
| Q |
113 |
gtatttcaacaatcttctttcaccagattttaggaaatccttgaacaaggtaacggattcaagctagattaaata---tattaatcaatttaaataaata |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| || |||||||| |||||||||||||||||||||| |
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| T |
9878859 |
gtatttcaacaatcttctttcaccagattttaggaaatccttgaacaaggtatgtgcttcaaggtaaattaaatatagtattaatcaatttaaataaata |
9878760 |
T |
|
| Q |
210 |
ta |
211 |
Q |
| |
|
|| |
|
|
| T |
9878759 |
ta |
9878758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 23 - 205
Target Start/End: Complemental strand, 9898987 - 9898799
Alignment:
| Q |
23 |
gatgggttttattcaacttttggaagtggcttcaatgccagttattcaagtcttacttattagtgcattgggagctttcatggctactcagtatttcaac |
122 |
Q |
| |
|
|||||||||| | |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
9898987 |
gatgggttttgtacaacttttggaagtggcttctatgccagttattcaagtcttacttgttagtgcattgggagctttcatggccactcagtatttcaat |
9898888 |
T |
|
| Q |
123 |
aatcttctttcaccagattttaggaaatccttgaacaaggtaacgga------ttcaagctagattaaatatattaatcaatttaaata |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||| |
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| T |
9898887 |
aatcttctttcaccagattttaggaaatccttgaacaaggtaagtgattcaatttcaagctaaattaaatatattaatcaatttaaata |
9898799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 160
Target Start/End: Original strand, 7914127 - 7914250
Alignment:
| Q |
37 |
aacttttggaagtggcttcaatgccagttattcaagtcttacttattagtgcattgggagctttcatggctactcagtatttcaacaatcttctttcacc |
136 |
Q |
| |
|
|||||||||| ||||||| ||||||| ||| ||||| |||| |||||||||||| ||||||| ||||||||||| |||||||| |||||||||| | | |
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| T |
7914127 |
aacttttggatgtggcttttatgccagctatgaaagtcctactaattagtgcattgagagcttttatggctactcaatatttcaataatcttcttttagc |
7914226 |
T |
|
| Q |
137 |
agattttaggaaatccttgaacaa |
160 |
Q |
| |
|
||| ||||| |||||||||||||| |
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|
| T |
7914227 |
agactttagaaaatccttgaacaa |
7914250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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