View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9910_high_34 (Length: 243)
Name: NF9910_high_34
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9910_high_34 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 225
Target Start/End: Original strand, 23696908 - 23697118
Alignment:
| Q |
15 |
tatggtgttagattcacaaaaattttactgtccttttaatgattgttcagctatgttggtgaatgatgaagaggaagttgtaaccgtttctgagtgtcct |
114 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23696908 |
tatggtgttagattcacaaaaattgtactgtccttttaatgattgttcagctatgttggtgaatgatgaagaggaagttgtaaccgtttctgagtgtcct |
23697007 |
T |
|
| Q |
115 |
cattgtaatagattattttgtgcacaatgtaaggtttcatggcactctggtgttgattgtagagagtttcaaagcttggaagacggcgagcgagggagga |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
23697008 |
cattgtaatagattattttgtgcacaatgtaaggtttcatggcactctggtgttgattgtagagagtttcaaagcttggaagatggcgagcgagggagga |
23697107 |
T |
|
| Q |
215 |
aagatctaatg |
225 |
Q |
| |
|
||||||||||| |
|
|
| T |
23697108 |
aagatctaatg |
23697118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 23701024 - 23700814
Alignment:
| Q |
15 |
tatggtgttagattcacaaaaattttactgtccttttaatgattgttcagctatgttggtgaatgatgaagaggaagttgtaaccgtttctgagtgtcct |
114 |
Q |
| |
|
||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||| ||| | |||| || | ||| || ||||| |
|
|
| T |
23701024 |
tatggtgttaggttcacagaaattttattgtccttttaatgattgttcagctatgttgttgaatgatgaaaagggaattgtgactgcttcggaatgtcca |
23700925 |
T |
|
| Q |
115 |
cattgtaatagattattttgtgcacaatgtaaggtttcatggcactctggtgttgattgtagagagtttcaaagcttggaagacggcgagcgagggagga |
214 |
Q |
| |
|
|||||| ||||||| || ||||||||||||||||||||||||||| | ||||||||||||| || ||||||||||||| |||||||||||||||||| | |
|
|
| T |
23700924 |
cattgtcatagattgttctgtgcacaatgtaaggtttcatggcacacaggtgttgattgtaaagtgtttcaaagcttgaaagacggcgagcgagggatgg |
23700825 |
T |
|
| Q |
215 |
aagatctaatg |
225 |
Q |
| |
|
||||||||||| |
|
|
| T |
23700824 |
aagatctaatg |
23700814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 15 - 225
Target Start/End: Original strand, 23694777 - 23694987
Alignment:
| Q |
15 |
tatggtgttagattcacaaaaattttactgtccttttaatgattgttcagctatgttggtgaatgatgaagaggaagttgtaaccgtttctgagtgtcct |
114 |
Q |
| |
|
||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||| ||| | |||| || | ||| || ||||| |
|
|
| T |
23694777 |
tatggtgttaggttcacagaaattttattgtccttttaatgattgttcagctatgttgttgaatgatgaaaagggaattgtgactgcttcggaatgtcca |
23694876 |
T |
|
| Q |
115 |
cattgtaatagattattttgtgcacaatgtaaggtttcatggcactctggtgttgattgtagagagtttcaaagcttggaagacggcgagcgagggagga |
214 |
Q |
| |
|
|||||| ||||||| || ||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||| |||| || |||||||||||| |
|
|
| T |
23694877 |
cattgtcatagattgttctgtgcacaatgtaaggtttcatggcacataggtgttgattgtaaagagtttctaagcttgaaagatggtgagcgagggaggg |
23694976 |
T |
|
| Q |
215 |
aagatctaatg |
225 |
Q |
| |
|
||||||||||| |
|
|
| T |
23694977 |
aagatctaatg |
23694987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 187
Target Start/End: Complemental strand, 8149144 - 8148995
Alignment:
| Q |
38 |
tttactgtccttttaatgattgttcagctatgttggtgaatgatgaagaggaagttgtaaccgtttctgagtgtcctcattgtaatagattattttgtgc |
137 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||| | | |||||||| | || | || ||||| |||||| ||||| |||| || || |
|
|
| T |
8149144 |
tttattgtccttttaaggattgttcagctatgttggtgaatgatggaaatgaagttgtgagaattacggaatgtccacattgtcatagactattctgcgc |
8149045 |
T |
|
| Q |
138 |
acaatgtaaggtttcatggcactctggtgttgattgtagagagtttcaaa |
187 |
Q |
| |
|
||||||| | ||| |||||||| | | || ||||||||||||||||||| |
|
|
| T |
8149044 |
acaatgtcaagttccatggcacacggaagtcgattgtagagagtttcaaa |
8148995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University