View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9910_high_35 (Length: 242)

Name: NF9910_high_35
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9910_high_35
NF9910_high_35
[»] chr1 (2 HSPs)
chr1 (1-157)||(2067171-2067327)
chr1 (153-224)||(2067543-2067614)
[»] chr5 (11 HSPs)
chr5 (2-134)||(34679461-34679593)
chr5 (2-148)||(27840388-27840534)
chr5 (2-149)||(34651072-34651219)
chr5 (2-126)||(18272105-18272229)
chr5 (2-145)||(34421053-34421196)
chr5 (1-123)||(34429271-34429393)
chr5 (2-151)||(34686638-34686787)
chr5 (47-132)||(34426917-34427002)
chr5 (182-223)||(34429619-34429660)
chr5 (182-223)||(27841206-27841247)
chr5 (182-223)||(34679322-34679363)
[»] chr7 (1 HSPs)
chr7 (4-105)||(45160886-45160987)


Alignment Details
Target: chr1 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 2067171 - 2067327
Alignment:
Q  1 ctgccaatgcatcataggctacttcccaagcagtgctcaattcttcgctccatttatctcctgatacttcctttattgttttcagcaaagcttctttaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2067171 ctgccaatgcatcataggctacttcccaagcagtgctcaattcttcgctccatttatctcctgatacttcctttattgttttcagcaaagcttctttaac 2067270  T
Q  101 cacctgcaagacaccaaaaacattaactttggattaacgatttaacacatagaaact 157  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  2067271 cacctgcaagacaccaaatacattaactttggattaacgatttaacacttagaaact 2067327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 153 - 224
Target Start/End: Original strand, 2067543 - 2067614
Alignment:
Q  153 aaacttaagaacacatcctttaaaatatttaccacaaaatgtggatcaaccactcctttctgaatgtggatt 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2067543 aaacttaagaacacatcctttaaaatatttaccacaaaatgtggatcaaccactcctttctgaatgtggatt 2067614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 9e-48; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 2 - 134
Target Start/End: Complemental strand, 34679593 - 34679461
Alignment:
Q  2 tgccaatgcatcataggctacttcccaagcagtgctcaattcttcgctccatttatctcctgatacttcctttattgttttcagcaaagcttctttaacc 101  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||    
T  34679593 tgccaatgcatcataagctacttcccaagcagtgctcaattcttcgctccatttatctcctgatgattcttttattgttttcagcaaagcttctttaacc 34679494  T
Q  102 acctgcaagacaccaaaaacattaactttggat 134  Q
    ||||| ||| | |||||| |||||| |||||||    
T  34679493 acctgtaaggcgccaaaagcattaattttggat 34679461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 2 - 148
Target Start/End: Original strand, 27840388 - 27840534
Alignment:
Q  2 tgccaatgcatcataggctacttcccaagcagtgctcaattcttcgctccatttatctcctgatacttcctttattgttttcagcaaagcttctttaacc 101  Q
    ||||| ||||||||| |||||||||||||||||||| | |||||| |||||||| ||||||| | |||| |||||||| || |||||||| |||||||||    
T  27840388 tgccagtgcatcataagctacttcccaagcagtgctaagttcttcactccatttgtctcctgctgcttcttttattgtcttgagcaaagcctctttaacc 27840487  T
Q  102 acctgcaagacaccaaaaacattaactttggattaacgatttaacac 148  Q
    ||||| | |||||||||||||||||||||||||||  ||||||||||    
T  27840488 acctgtacgacaccaaaaacattaactttggattagtgatttaacac 27840534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 2 - 149
Target Start/End: Complemental strand, 34651219 - 34651072
Alignment:
Q  2 tgccaatgcatcataggctacttcccaagcagtgctcaattcttcgctccatttatctcctgatacttcctttattgttttcagcaaagcttctttaacc 101  Q
    ||||||||||||||||||||||| ||| ||||| |||||||||||  ||||||||||   |||| ||||||||||||||||||  |||||||||||||||    
T  34651219 tgccaatgcatcataggctactttccatgcagtcctcaattcttcattccatttatcctttgatgcttcctttattgttttcaataaagcttctttaacc 34651120  T
Q  102 acctgcaagacaccaaaaacattaactttggattaacgatttaacaca 149  Q
    |||| |||| |||||||| |||||| |||||||||  |||||||||||    
T  34651119 acctacaaggcaccaaaatcattaattttggattagtgatttaacaca 34651072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 2 - 126
Target Start/End: Complemental strand, 18272229 - 18272105
Alignment:
Q  2 tgccaatgcatcataggctacttcccaagcagtgctcaattcttcgctccatttatctcctgatacttcctttattgttttcagcaaagcttctttaacc 101  Q
    ||||||| ||||||||||||  |||||||||||| | |||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  18272229 tgccaatccatcataggctatctcccaagcagtgtttaattcttcactccatttatcttctgatacttcctttattgtttttagcaaagcttctttaacc 18272130  T
Q  102 acctgcaagacaccaaaaacattaa 126  Q
    ||||| || ||| |||||| |||||    
T  18272129 acctgaaacacatcaaaaatattaa 18272105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 145
Target Start/End: Original strand, 34421053 - 34421196
Alignment:
Q  2 tgccaatgcatcataggctacttcccaagcagtgctcaattcttcgctccatttatctcctgatacttcctttattgttttcagcaaagcttctttaacc 101  Q
    ||||||| |||| || || | ||||||||||||  | | |||||||||||| || || || ||| |||||||||||||||| | ||||||||||||||||    
T  34421053 tgccaattcatcgtaagcaatttcccaagcagtatttagttcttcgctccagttgtcccccgatgcttcctttattgtttttaacaaagcttctttaacc 34421152  T
Q  102 acctgcaagacaccaaaaacattaactttggattaacgatttaa 145  Q
    |||| |||||||||||||| ||||| ||||| ||| ||||||||    
T  34421153 acctacaagacaccaaaaaaattaattttggtttagcgatttaa 34421196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 34429271 - 34429393
Alignment:
Q  1 ctgccaatgcatcataggctacttcccaagcagtgctcaattcttcgctccatttatctcctgatacttcctttattgttttcagcaaagcttctttaac 100  Q
    |||||||| ||||||| || |||||||||||||| || | |||||||||||| ||  | |||| | |||||||||| ||||||| |||||||||||| ||    
T  34429271 ctgccaatccatcataagcaacttcccaagcagtacttagttcttcgctccagttgccccctgctgcttcctttatcgttttcaacaaagcttcttttac 34429370  T
Q  101 cacctgcaagacaccaaaaacat 123  Q
    ||||| |||  ||||||||||||    
T  34429371 cacctacaaagcaccaaaaacat 34429393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 151
Target Start/End: Complemental strand, 34686787 - 34686638
Alignment:
Q  2 tgccaatgcatcataggctacttcccaagcagtgctcaattcttcgctccatttatctcctgatacttcctttattgttttcagcaaagcttctttaacc 101  Q
    ||||||| ||||||| || ||||||||||  ||||| | |||||| ||||| || |||||    |||||||| |||||||| ||||||||||||||||||    
T  34686787 tgccaatccatcataagcaacttcccaagatgtgctaagttcttcactccacttgtctcccacaacttccttaattgtttttagcaaagcttctttaacc 34686688  T
Q  102 acctgcaagacaccaaaaacattaactttggattaacgatttaacacata 151  Q
    |||||||||   |||||| |||||| ||||| ||| ||| |||| |||||    
T  34686687 acctgcaaggtgccaaaaccattaattttgggttagcgacttaaaacata 34686638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 34426917 - 34427002
Alignment:
Q  47 gctccatttatctcctgatacttcctttattgttttcagcaaagcttctttaaccacctgcaagacaccaaaaacattaactttgg 132  Q
    ||||||||| ||||||| |||||||||||||||||| | |||||||||||||||||| || |||||| |||| |||| || |||||    
T  34426917 gctccatttgtctcctgctacttcctttattgtttttaacaaagcttctttaaccacatgaaagacatcaaacacatcaattttgg 34427002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 34429619 - 34429660
Alignment:
Q  182 taccacaaaatgtggatcaaccactcctttctgaatgtggat 223  Q
    |||||||||||| |||||||||||||||||||| ||||||||    
T  34429619 taccacaaaatgaggatcaaccactcctttctggatgtggat 34429660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 27841206 - 27841247
Alignment:
Q  182 taccacaaaatgtggatcaaccactcctttctgaatgtggat 223  Q
    |||||||||||| |||||||| ||||| ||||||||||||||    
T  27841206 taccacaaaatgaggatcaacaactcccttctgaatgtggat 27841247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 34679363 - 34679322
Alignment:
Q  182 taccacaaaatgtggatcaaccactcctttctgaatgtggat 223  Q
    |||||||||||| |||||||| ||||| ||||||||||||||    
T  34679363 taccacaaaatgaggatcaacaactccattctgaatgtggat 34679322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 45160886 - 45160987
Alignment:
Q  4 ccaatgcatcataggctacttcccaagcagtgctcaattcttcgctccatttatctcctgatacttcctttattgttttcagcaaagcttctttaaccac 103  Q
    ||||||||||||| ||||||||||||||||| || ||||||||||| ||||| |||||||   |||| || || ||||||||||| ||||||||||||||    
T  45160886 ccaatgcatcataagctacttcccaagcagtactaaattcttcgcttcatttgtctcctgccgcttctttcatcgttttcagcaatgcttctttaaccac 45160985  T
Q  104 ct 105  Q
    ||    
T  45160986 ct 45160987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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