View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9910_high_36 (Length: 240)
Name: NF9910_high_36
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9910_high_36 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 4356060 - 4355838
Alignment:
| Q |
18 |
aatcctagtcctctcactctaactttcaacactttctgccatgaactcgactcataatctttcaaataccaaacagtaaaaactgactttcttactttca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4356060 |
aatcctagtcctctcactctaactttcaacactttctgccatgaactcgactcataatctttcaaataccaaacagtaaaaactgactttcttactttca |
4355961 |
T |
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| Q |
118 |
ccaaacaaatagatcgtttcgagcttgacaccttaccccaattaaatatgcccatgttagtcatggtatggcaacctctaatggcttctcttggcaacct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4355960 |
ccaaacaaatagatcgtttcgagcttgacaccttaccccaattaaatatgcccatgttagtcatggtatggcaacctctaatggcttctcttggcaacct |
4355861 |
T |
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| Q |
218 |
cagcattgttgagtttccattct |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
4355860 |
cagcattgttgagtttccattct |
4355838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 4674852 - 4675074
Alignment:
| Q |
18 |
aatcctagtcctctcactctaactttcaacactttctgccatgaactcgactcataatctttcaaataccaaacagtaaaaactgactttcttactttca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4674852 |
aatcctagtcctctcactctaactttcaacactttctgccatgaactcgactcataatctttcaaataccaaacagtaaaaactgactttcttactttca |
4674951 |
T |
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| Q |
118 |
ccaaacaaatagatcgtttcgagcttgacaccttaccccaattaaatatgcccatgttagtcatggtatggcaacctctaatggcttctcttggcaacct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4674952 |
ccaaacaaatagatcgtttcgagcttgacaccttaccccaattaaatatgcccatgttagtcatggtatggcaacctctaatggcttctcttggcaacct |
4675051 |
T |
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| Q |
218 |
cagcattgttgagtttccattct |
240 |
Q |
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| T |
4675052 |
cagcattgttgagtttccattct |
4675074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 127
Target Start/End: Complemental strand, 38249634 - 38249535
Alignment:
| Q |
28 |
ctctcactctaactttcaacactttctgccatgaactcgactcataatctttcaaataccaaacagtaaaaactgactttcttactttcaccaaacaaat |
127 |
Q |
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|||| ||||| |||||||| ||||| |||||||||| |||||||| ||||| ||| ||||| ||||||||| ||||| |||| ||||||||||||||| |
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| T |
38249634 |
ctcttactctcactttcaatactttttgccatgaacctgactcatagtcttttaaaacccaaatagtaaaaacagacttacttaatttcaccaaacaaat |
38249535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 12036924 - 12036860
Alignment:
| Q |
66 |
gactcataatctttcaaataccaaacagtaaaaactgactttcttactttcaccaaacaaataga |
130 |
Q |
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|||||||| ||||| ||| |||||||||| ||||| | ||||||| |||||||||||||||||| |
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| T |
12036924 |
gactcatagtcttttaaaaaccaaacagtgaaaacaaaatttcttaatttcaccaaacaaataga |
12036860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 20657241 - 20657177
Alignment:
| Q |
66 |
gactcataatctttcaaataccaaacagtaaaaactgactttcttactttcaccaaacaaataga |
130 |
Q |
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|||||||| ||||| ||| |||||||||| ||||| | ||||||| |||||||||||||||||| |
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| T |
20657241 |
gactcatagtcttttaaaaaccaaacagtgaaaacataatttcttaatttcaccaaacaaataga |
20657177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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