View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9910_high_4 (Length: 394)
Name: NF9910_high_4
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9910_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 33855771 - 33856130
Alignment:
| Q |
1 |
actttgtagcaccaacacttctaatcaaaggtgtctaacaatgatagaacaaacatgcacatgtgattcaatttatcttactcatttctacaatttattc |
100 |
Q |
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| T |
33855771 |
actttgtagcaccaacacttctaatcaaaagtgtctaacaatgatagaacaaatacgcacatgtgattcaatttatctt-------------------tc |
33855851 |
T |
|
| Q |
101 |
tcatttctacaatttattgcatcaacatgtgaatgtgagtgtcatgtatg---tccatgtttgtctacatagatagaaaattagcaattctttaatcttt |
197 |
Q |
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| T |
33855852 |
tcatttctacaatttattgcatcaacatgtgaatgtgagtgtcatgtatgatgtccatgtttgtctacatagatagaaaattaacaattctttaatcttt |
33855951 |
T |
|
| Q |
198 |
cattcagtttcatatcaaattgacttataaatatacaaaatctttctgtcaaaatcaaactatacaaaatctattctatttttattatatctctaagata |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33855952 |
cattcagtttcatatcaaattgacttataaatatacaaaatctttctgtcaaattcaaactatacaaaatctattttatttttattatatctctaagata |
33856051 |
T |
|
| Q |
298 |
gattcaatttcaacataaacatatacattgacacttattcaattcatcgtattctacaacatttacaaaatacaaatag |
376 |
Q |
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| T |
33856052 |
gattcaattccaacataaacatatacatcgacacttattcaattcatcgtattctacaacatttacaaaatacaaatag |
33856130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 125 - 319
Target Start/End: Original strand, 33855436 - 33855635
Alignment:
| Q |
125 |
acatgtgaatgtgagtgtcatgta---tgtccatgtttgtctacatagatagaaaattagcaattctttaatctttcattcagttt-catatcaaattga |
220 |
Q |
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| T |
33855436 |
acatgtgaatgtaagtgtcatgtacaatgtccatgtttgtcttcacacatagaaaattaagaattctttattcttgcatttaggttgcatatcaaattga |
33855535 |
T |
|
| Q |
221 |
cttataaatatacaaaatctttctgtcaaaatcaaa-ctatacaaaatctattctatttttattatatctctaagatagattcaatttcaacataaacat |
319 |
Q |
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||| ||| | |||| ||||||||||||||| ||| ||||||||||| |||| |||||||||||||| |||| ||| |||||||||||| ||| |||| |
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| T |
33855536 |
cttttaacttcacaatatctttctgtcaaaagaaaaactatacaaaatatattttatttttattatatttctacaatatattcaatttcaatatatacat |
33855635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 33855707 - 33855770
Alignment:
| Q |
3 |
tttgtagcaccaacacttctaatcaaaggtgtctaacaatgatagaacaaacatgcacatgtgatt |
68 |
Q |
| |
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||||||||||| ||| ||||||| ||||||| |||||| ||||||||||||| |||||||||||| |
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| T |
33855707 |
tttgtagcaccgacaattctaat--aaggtgtttaacaacgatagaacaaacacgcacatgtgatt |
33855770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 663724 - 663756
Alignment:
| Q |
2 |
ctttgtagcaccaacacttctaatcaaaggtgt |
34 |
Q |
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|
| T |
663724 |
ctttgtagcaccaacacttcttatcaaaggtgt |
663756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 18622542 - 18622513
Alignment:
| Q |
1 |
actttgtagcaccaacacttctaatcaaag |
30 |
Q |
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| T |
18622542 |
actttgtagcaccaacacttctaatcaaag |
18622513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 48358717 - 48358685
Alignment:
| Q |
2 |
ctttgtagcaccaacacttctaatcaaaggtgt |
34 |
Q |
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|||||||||||| |||||||||||||||||||| |
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| T |
48358717 |
ctttgtagcaccgacacttctaatcaaaggtgt |
48358685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 22543553 - 22543521
Alignment:
| Q |
2 |
ctttgtagcaccaacacttctaatcaaaggtgt |
34 |
Q |
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||||||||||||||||| ||||||||||||||| |
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| T |
22543553 |
ctttgtagcaccaacacctctaatcaaaggtgt |
22543521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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